Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2652 and EX28DRAFT_2653 are separated by 109 nucleotides EX28DRAFT_2653 and EX28DRAFT_2654 are separated by 57 nucleotides EX28DRAFT_2654 and EX28DRAFT_2655 are separated by 106 nucleotides EX28DRAFT_2655 and EX28DRAFT_2656 are separated by 260 nucleotides
EX28DRAFT_2652: EX28DRAFT_2652 - Outer membrane protein (porin), at 2,689,767 to 2,690,819
_2652
EX28DRAFT_2653: EX28DRAFT_2653 - Transcriptional regulator Crl, at 2,690,929 to 2,691,330
_2653
EX28DRAFT_2654: EX28DRAFT_2654 - Alpha/beta hydrolase of unknown function (DUF1100), at 2,691,388 to 2,692,632
_2654
EX28DRAFT_2655: EX28DRAFT_2655 - Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins, at 2,692,739 to 2,693,197
_2655
EX28DRAFT_2656: EX28DRAFT_2656 - Xaa-His dipeptidase, at 2,693,458 to 2,694,915
_2656
Position (kb)
2691
2692
2693 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2690.473 kb on - strand, within EX28DRAFT_2652 at 2690.490 kb on + strand, within EX28DRAFT_2652 at 2690.505 kb on + strand, within EX28DRAFT_2652 at 2690.523 kb on - strand, within EX28DRAFT_2652 at 2690.583 kb on + strand, within EX28DRAFT_2652 at 2690.676 kb on + strand, within EX28DRAFT_2652 at 2690.676 kb on - strand, within EX28DRAFT_2652 at 2690.802 kb on - strand at 2690.808 kb on + strand at 2690.809 kb on - strand at 2690.869 kb on + strand at 2690.870 kb on - strand at 2690.870 kb on - strand at 2690.927 kb on + strand at 2691.036 kb on + strand, within EX28DRAFT_2653 at 2691.037 kb on - strand, within EX28DRAFT_2653 at 2691.037 kb on - strand, within EX28DRAFT_2653 at 2691.037 kb on - strand, within EX28DRAFT_2653 at 2691.037 kb on - strand, within EX28DRAFT_2653 at 2691.038 kb on + strand, within EX28DRAFT_2653 at 2691.039 kb on - strand, within EX28DRAFT_2653 at 2691.120 kb on - strand, within EX28DRAFT_2653 at 2691.123 kb on + strand, within EX28DRAFT_2653 at 2691.123 kb on + strand, within EX28DRAFT_2653 at 2691.124 kb on - strand, within EX28DRAFT_2653 at 2691.125 kb on + strand, within EX28DRAFT_2653 at 2691.265 kb on - strand, within EX28DRAFT_2653 at 2691.300 kb on + strand at 2691.386 kb on + strand at 2691.387 kb on - strand at 2691.608 kb on + strand, within EX28DRAFT_2654 at 2691.684 kb on - strand, within EX28DRAFT_2654 at 2691.684 kb on - strand, within EX28DRAFT_2654 at 2691.694 kb on + strand, within EX28DRAFT_2654 at 2691.695 kb on - strand, within EX28DRAFT_2654 at 2691.780 kb on + strand, within EX28DRAFT_2654 at 2691.781 kb on - strand, within EX28DRAFT_2654 at 2691.782 kb on + strand, within EX28DRAFT_2654 at 2691.783 kb on - strand, within EX28DRAFT_2654 at 2691.993 kb on - strand, within EX28DRAFT_2654 at 2692.002 kb on - strand, within EX28DRAFT_2654 at 2692.004 kb on + strand, within EX28DRAFT_2654 at 2692.074 kb on + strand, within EX28DRAFT_2654 at 2692.658 kb on - strand at 2692.666 kb on + strand at 2692.666 kb on + strand at 2692.666 kb on + strand at 2692.686 kb on + strand at 2693.011 kb on - strand, within EX28DRAFT_2655 at 2693.011 kb on - strand, within EX28DRAFT_2655 at 2693.011 kb on - strand, within EX28DRAFT_2655 at 2693.011 kb on - strand, within EX28DRAFT_2655 at 2693.101 kb on + strand, within EX28DRAFT_2655 at 2693.185 kb on - strand at 2693.220 kb on + strand at 2693.252 kb on - strand at 2693.329 kb on + strand at 2693.329 kb on + strand at 2693.330 kb on - strand at 2693.330 kb on - strand at 2693.330 kb on - strand at 2693.356 kb on + strand at 2693.395 kb on + strand at 2693.396 kb on - strand at 2693.396 kb on - strand at 2693.454 kb on + strand at 2693.455 kb on - strand at 2693.455 kb on - strand at 2693.562 kb on + strand at 2693.562 kb on + strand at 2693.563 kb on - strand at 2693.563 kb on - strand at 2693.565 kb on + strand at 2693.566 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,690,473 - EX28DRAFT_2652 0.67 +0.3 2,690,490 + EX28DRAFT_2652 0.69 +0.3 2,690,505 + EX28DRAFT_2652 0.70 -0.5 2,690,523 - EX28DRAFT_2652 0.72 -0.0 2,690,583 + EX28DRAFT_2652 0.77 -1.6 2,690,676 + EX28DRAFT_2652 0.86 +0.2 2,690,676 - EX28DRAFT_2652 0.86 +0.1 2,690,802 - -0.0 2,690,808 + +0.6 2,690,809 - +0.4 2,690,869 + +0.9 2,690,870 - +0.1 2,690,870 - -1.3 2,690,927 + -0.2 2,691,036 + EX28DRAFT_2653 0.27 +0.4 2,691,037 - EX28DRAFT_2653 0.27 -0.5 2,691,037 - EX28DRAFT_2653 0.27 +0.1 2,691,037 - EX28DRAFT_2653 0.27 +0.2 2,691,037 - EX28DRAFT_2653 0.27 +1.3 2,691,038 + EX28DRAFT_2653 0.27 -0.2 2,691,039 - EX28DRAFT_2653 0.27 -0.6 2,691,120 - EX28DRAFT_2653 0.48 +0.4 2,691,123 + EX28DRAFT_2653 0.48 -0.9 2,691,123 + EX28DRAFT_2653 0.48 +0.6 2,691,124 - EX28DRAFT_2653 0.49 +0.1 2,691,125 + EX28DRAFT_2653 0.49 -1.1 2,691,265 - EX28DRAFT_2653 0.84 +0.1 2,691,300 + +0.0 2,691,386 + +0.1 2,691,387 - +0.2 2,691,608 + EX28DRAFT_2654 0.18 -1.6 2,691,684 - EX28DRAFT_2654 0.24 -0.4 2,691,684 - EX28DRAFT_2654 0.24 -4.1 2,691,694 + EX28DRAFT_2654 0.25 +0.7 2,691,695 - EX28DRAFT_2654 0.25 -0.9 2,691,780 + EX28DRAFT_2654 0.31 -1.9 2,691,781 - EX28DRAFT_2654 0.32 -1.7 2,691,782 + EX28DRAFT_2654 0.32 -0.5 2,691,783 - EX28DRAFT_2654 0.32 -1.1 2,691,993 - EX28DRAFT_2654 0.49 -0.9 2,692,002 - EX28DRAFT_2654 0.49 -2.9 2,692,004 + EX28DRAFT_2654 0.49 -1.2 2,692,074 + EX28DRAFT_2654 0.55 -3.4 2,692,658 - +0.5 2,692,666 + +0.5 2,692,666 + -0.5 2,692,666 + +0.7 2,692,686 + +0.3 2,693,011 - EX28DRAFT_2655 0.59 +1.8 2,693,011 - EX28DRAFT_2655 0.59 +0.7 2,693,011 - EX28DRAFT_2655 0.59 +0.5 2,693,011 - EX28DRAFT_2655 0.59 +0.5 2,693,101 + EX28DRAFT_2655 0.79 -0.1 2,693,185 - +0.0 2,693,220 + +0.6 2,693,252 - -0.1 2,693,329 + +0.9 2,693,329 + +0.8 2,693,330 - +0.6 2,693,330 - +0.2 2,693,330 - +0.2 2,693,356 + -1.1 2,693,395 + -0.1 2,693,396 - +0.9 2,693,396 - -0.5 2,693,454 + -1.0 2,693,455 - -0.3 2,693,455 - -0.5 2,693,562 + -0.6 2,693,562 + -0.2 2,693,563 - -0.2 2,693,563 - -0.2 2,693,565 + -0.1 2,693,566 - +0.2
Or see this region's nucleotide sequence