Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2624 and EX28DRAFT_2625 are separated by 23 nucleotides EX28DRAFT_2625 and EX28DRAFT_2626 are separated by 13 nucleotides EX28DRAFT_2626 and EX28DRAFT_2627 are separated by 17 nucleotides EX28DRAFT_2627 and EX28DRAFT_2628 overlap by 4 nucleotides
EX28DRAFT_2624: EX28DRAFT_2624 - Phosphotransferase enzyme family, at 2,663,361 to 2,664,416
_2624
EX28DRAFT_2625: EX28DRAFT_2625 - Peptidase family U32, at 2,664,440 to 2,665,378
_2625
EX28DRAFT_2626: EX28DRAFT_2626 - hypothetical protein, at 2,665,392 to 2,666,168
_2626
EX28DRAFT_2627: EX28DRAFT_2627 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 2,666,186 to 2,667,157
_2627
EX28DRAFT_2628: EX28DRAFT_2628 - Aspartate/tyrosine/aromatic aminotransferase, at 2,667,154 to 2,668,305
_2628
Position (kb)
2665
2666
2667 Strain fitness (log2 ratio)
-1
0
1
2 at 2664.439 kb on + strand at 2664.476 kb on - strand at 2664.725 kb on + strand, within EX28DRAFT_2625 at 2664.769 kb on + strand, within EX28DRAFT_2625 at 2664.770 kb on - strand, within EX28DRAFT_2625 at 2664.900 kb on - strand, within EX28DRAFT_2625 at 2664.962 kb on - strand, within EX28DRAFT_2625 at 2664.970 kb on + strand, within EX28DRAFT_2625 at 2665.003 kb on + strand, within EX28DRAFT_2625 at 2665.006 kb on + strand, within EX28DRAFT_2625 at 2665.045 kb on + strand, within EX28DRAFT_2625 at 2665.045 kb on + strand, within EX28DRAFT_2625 at 2665.045 kb on + strand, within EX28DRAFT_2625 at 2665.046 kb on - strand, within EX28DRAFT_2625 at 2665.046 kb on - strand, within EX28DRAFT_2625 at 2665.048 kb on + strand, within EX28DRAFT_2625 at 2665.048 kb on + strand, within EX28DRAFT_2625 at 2665.048 kb on + strand, within EX28DRAFT_2625 at 2665.079 kb on + strand, within EX28DRAFT_2625 at 2665.134 kb on - strand, within EX28DRAFT_2625 at 2665.134 kb on - strand, within EX28DRAFT_2625 at 2665.152 kb on - strand, within EX28DRAFT_2625 at 2665.152 kb on - strand, within EX28DRAFT_2625 at 2665.163 kb on + strand, within EX28DRAFT_2625 at 2665.202 kb on + strand, within EX28DRAFT_2625 at 2665.327 kb on - strand at 2665.376 kb on + strand at 2665.377 kb on - strand at 2665.377 kb on - strand at 2665.377 kb on - strand at 2665.399 kb on + strand at 2665.400 kb on - strand at 2665.400 kb on - strand at 2665.464 kb on + strand at 2665.464 kb on + strand at 2665.503 kb on + strand, within EX28DRAFT_2626 at 2665.503 kb on + strand, within EX28DRAFT_2626 at 2665.688 kb on + strand, within EX28DRAFT_2626 at 2665.699 kb on - strand, within EX28DRAFT_2626 at 2665.931 kb on - strand, within EX28DRAFT_2626 at 2665.988 kb on - strand, within EX28DRAFT_2626 at 2666.260 kb on + strand at 2666.839 kb on + strand, within EX28DRAFT_2627 at 2666.859 kb on + strand, within EX28DRAFT_2627 at 2666.866 kb on + strand, within EX28DRAFT_2627 at 2666.953 kb on - strand, within EX28DRAFT_2627 at 2667.100 kb on + strand at 2667.100 kb on + strand at 2667.101 kb on - strand at 2667.101 kb on - strand at 2667.121 kb on + strand at 2667.135 kb on + strand at 2667.135 kb on + strand at 2667.139 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,664,439 + -0.6 2,664,476 - +1.6 2,664,725 + EX28DRAFT_2625 0.30 +0.0 2,664,769 + EX28DRAFT_2625 0.35 -0.5 2,664,770 - EX28DRAFT_2625 0.35 +0.6 2,664,900 - EX28DRAFT_2625 0.49 -0.1 2,664,962 - EX28DRAFT_2625 0.56 +0.0 2,664,970 + EX28DRAFT_2625 0.56 -1.3 2,665,003 + EX28DRAFT_2625 0.60 +0.9 2,665,006 + EX28DRAFT_2625 0.60 -0.3 2,665,045 + EX28DRAFT_2625 0.64 +0.4 2,665,045 + EX28DRAFT_2625 0.64 +0.6 2,665,045 + EX28DRAFT_2625 0.64 +0.3 2,665,046 - EX28DRAFT_2625 0.65 +1.8 2,665,046 - EX28DRAFT_2625 0.65 +1.2 2,665,048 + EX28DRAFT_2625 0.65 +0.8 2,665,048 + EX28DRAFT_2625 0.65 +0.3 2,665,048 + EX28DRAFT_2625 0.65 -1.3 2,665,079 + EX28DRAFT_2625 0.68 +1.0 2,665,134 - EX28DRAFT_2625 0.74 +0.0 2,665,134 - EX28DRAFT_2625 0.74 +0.6 2,665,152 - EX28DRAFT_2625 0.76 +0.5 2,665,152 - EX28DRAFT_2625 0.76 +1.4 2,665,163 + EX28DRAFT_2625 0.77 +1.1 2,665,202 + EX28DRAFT_2625 0.81 -0.1 2,665,327 - +0.4 2,665,376 + +0.4 2,665,377 - +0.2 2,665,377 - +0.2 2,665,377 - -0.0 2,665,399 + +0.5 2,665,400 - +0.5 2,665,400 - +0.5 2,665,464 + -0.6 2,665,464 + +0.7 2,665,503 + EX28DRAFT_2626 0.14 +0.3 2,665,503 + EX28DRAFT_2626 0.14 +0.4 2,665,688 + EX28DRAFT_2626 0.38 +0.4 2,665,699 - EX28DRAFT_2626 0.40 +0.3 2,665,931 - EX28DRAFT_2626 0.69 +0.5 2,665,988 - EX28DRAFT_2626 0.77 -0.2 2,666,260 + -0.7 2,666,839 + EX28DRAFT_2627 0.67 -0.0 2,666,859 + EX28DRAFT_2627 0.69 -0.4 2,666,866 + EX28DRAFT_2627 0.70 +0.3 2,666,953 - EX28DRAFT_2627 0.79 +0.5 2,667,100 + +0.0 2,667,100 + -0.1 2,667,101 - +0.2 2,667,101 - +0.3 2,667,121 + +0.2 2,667,135 + +1.0 2,667,135 + +0.6 2,667,139 - +0.2
Or see this region's nucleotide sequence