Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2625

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2624 and EX28DRAFT_2625 are separated by 23 nucleotidesEX28DRAFT_2625 and EX28DRAFT_2626 are separated by 13 nucleotidesEX28DRAFT_2626 and EX28DRAFT_2627 are separated by 17 nucleotides EX28DRAFT_2624: EX28DRAFT_2624 - Phosphotransferase enzyme family, at 2,663,361 to 2,664,416 _2624 EX28DRAFT_2625: EX28DRAFT_2625 - Peptidase family U32, at 2,664,440 to 2,665,378 _2625 EX28DRAFT_2626: EX28DRAFT_2626 - hypothetical protein, at 2,665,392 to 2,666,168 _2626 EX28DRAFT_2627: EX28DRAFT_2627 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 2,666,186 to 2,667,157 _2627 Position (kb) 2664 2665 2666Strain fitness (log2 ratio) -1 0 1 2at 2663.524 kb on + strand, within EX28DRAFT_2624at 2663.741 kb on - strand, within EX28DRAFT_2624at 2663.800 kb on + strand, within EX28DRAFT_2624at 2663.816 kb on - strand, within EX28DRAFT_2624at 2663.865 kb on + strand, within EX28DRAFT_2624at 2663.919 kb on + strand, within EX28DRAFT_2624at 2663.922 kb on - strand, within EX28DRAFT_2624at 2664.011 kb on - strand, within EX28DRAFT_2624at 2664.265 kb on + strand, within EX28DRAFT_2624at 2664.439 kb on + strandat 2664.476 kb on - strandat 2664.725 kb on + strand, within EX28DRAFT_2625at 2664.769 kb on + strand, within EX28DRAFT_2625at 2664.770 kb on - strand, within EX28DRAFT_2625at 2664.900 kb on - strand, within EX28DRAFT_2625at 2664.962 kb on - strand, within EX28DRAFT_2625at 2664.970 kb on + strand, within EX28DRAFT_2625at 2665.003 kb on + strand, within EX28DRAFT_2625at 2665.006 kb on + strand, within EX28DRAFT_2625at 2665.045 kb on + strand, within EX28DRAFT_2625at 2665.045 kb on + strand, within EX28DRAFT_2625at 2665.045 kb on + strand, within EX28DRAFT_2625at 2665.046 kb on - strand, within EX28DRAFT_2625at 2665.046 kb on - strand, within EX28DRAFT_2625at 2665.048 kb on + strand, within EX28DRAFT_2625at 2665.048 kb on + strand, within EX28DRAFT_2625at 2665.048 kb on + strand, within EX28DRAFT_2625at 2665.079 kb on + strand, within EX28DRAFT_2625at 2665.134 kb on - strand, within EX28DRAFT_2625at 2665.134 kb on - strand, within EX28DRAFT_2625at 2665.152 kb on - strand, within EX28DRAFT_2625at 2665.152 kb on - strand, within EX28DRAFT_2625at 2665.163 kb on + strand, within EX28DRAFT_2625at 2665.202 kb on + strand, within EX28DRAFT_2625at 2665.327 kb on - strandat 2665.376 kb on + strandat 2665.377 kb on - strandat 2665.377 kb on - strandat 2665.377 kb on - strandat 2665.399 kb on + strandat 2665.400 kb on - strandat 2665.400 kb on - strandat 2665.464 kb on + strandat 2665.464 kb on + strandat 2665.503 kb on + strand, within EX28DRAFT_2626at 2665.503 kb on + strand, within EX28DRAFT_2626at 2665.688 kb on + strand, within EX28DRAFT_2626at 2665.699 kb on - strand, within EX28DRAFT_2626at 2665.931 kb on - strand, within EX28DRAFT_2626at 2665.988 kb on - strand, within EX28DRAFT_2626at 2666.260 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
2,663,524 + EX28DRAFT_2624 0.15 +0.4
2,663,741 - EX28DRAFT_2624 0.36 +0.8
2,663,800 + EX28DRAFT_2624 0.42 +0.1
2,663,816 - EX28DRAFT_2624 0.43 +0.9
2,663,865 + EX28DRAFT_2624 0.48 -0.2
2,663,919 + EX28DRAFT_2624 0.53 +0.3
2,663,922 - EX28DRAFT_2624 0.53 +0.3
2,664,011 - EX28DRAFT_2624 0.62 -0.4
2,664,265 + EX28DRAFT_2624 0.86 -0.4
2,664,439 + -0.6
2,664,476 - +1.6
2,664,725 + EX28DRAFT_2625 0.30 +0.0
2,664,769 + EX28DRAFT_2625 0.35 -0.5
2,664,770 - EX28DRAFT_2625 0.35 +0.6
2,664,900 - EX28DRAFT_2625 0.49 -0.1
2,664,962 - EX28DRAFT_2625 0.56 +0.0
2,664,970 + EX28DRAFT_2625 0.56 -1.3
2,665,003 + EX28DRAFT_2625 0.60 +0.9
2,665,006 + EX28DRAFT_2625 0.60 -0.3
2,665,045 + EX28DRAFT_2625 0.64 +0.4
2,665,045 + EX28DRAFT_2625 0.64 +0.6
2,665,045 + EX28DRAFT_2625 0.64 +0.3
2,665,046 - EX28DRAFT_2625 0.65 +1.8
2,665,046 - EX28DRAFT_2625 0.65 +1.2
2,665,048 + EX28DRAFT_2625 0.65 +0.8
2,665,048 + EX28DRAFT_2625 0.65 +0.3
2,665,048 + EX28DRAFT_2625 0.65 -1.3
2,665,079 + EX28DRAFT_2625 0.68 +1.0
2,665,134 - EX28DRAFT_2625 0.74 +0.0
2,665,134 - EX28DRAFT_2625 0.74 +0.6
2,665,152 - EX28DRAFT_2625 0.76 +0.5
2,665,152 - EX28DRAFT_2625 0.76 +1.4
2,665,163 + EX28DRAFT_2625 0.77 +1.1
2,665,202 + EX28DRAFT_2625 0.81 -0.1
2,665,327 - +0.4
2,665,376 + +0.4
2,665,377 - +0.2
2,665,377 - +0.2
2,665,377 - -0.0
2,665,399 + +0.5
2,665,400 - +0.5
2,665,400 - +0.5
2,665,464 + -0.6
2,665,464 + +0.7
2,665,503 + EX28DRAFT_2626 0.14 +0.3
2,665,503 + EX28DRAFT_2626 0.14 +0.4
2,665,688 + EX28DRAFT_2626 0.38 +0.4
2,665,699 - EX28DRAFT_2626 0.40 +0.3
2,665,931 - EX28DRAFT_2626 0.69 +0.5
2,665,988 - EX28DRAFT_2626 0.77 -0.2
2,666,260 + -0.7

Or see this region's nucleotide sequence