Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2512 and EX28DRAFT_2513 overlap by 4 nucleotides EX28DRAFT_2513 and EX28DRAFT_2514 are separated by 261 nucleotides EX28DRAFT_2514 and EX28DRAFT_2515 are separated by 170 nucleotides EX28DRAFT_2515 and EX28DRAFT_2516 are separated by 33 nucleotides EX28DRAFT_2516 and EX28DRAFT_2517 are separated by 200 nucleotides
EX28DRAFT_2512: EX28DRAFT_2512 - hypothetical protein, at 2,544,798 to 2,545,013
_2512
EX28DRAFT_2513: EX28DRAFT_2513 - hypothetical protein, at 2,545,010 to 2,545,261
_2513
EX28DRAFT_2514: EX28DRAFT_2514 - RNA, at 2,545,523 to 2,545,619
_2514
EX28DRAFT_2515: EX28DRAFT_2515 - O-6-methylguanine DNA methyltransferase, at 2,545,790 to 2,546,101
_2515
EX28DRAFT_2516: EX28DRAFT_2516 - Uncharacterized protein conserved in bacteria, at 2,546,135 to 2,546,662
_2516
EX28DRAFT_2517: EX28DRAFT_2517 - acyl-CoA thioesterase II, at 2,546,863 to 2,547,723
_2517
Position (kb)
2545
2546
2547 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2544.800 kb on - strand at 2544.816 kb on - strand at 2544.936 kb on + strand, within EX28DRAFT_2512 at 2544.936 kb on + strand, within EX28DRAFT_2512 at 2544.937 kb on - strand, within EX28DRAFT_2512 at 2544.949 kb on + strand, within EX28DRAFT_2512 at 2544.982 kb on + strand, within EX28DRAFT_2512 at 2544.982 kb on + strand, within EX28DRAFT_2512 at 2545.130 kb on + strand, within EX28DRAFT_2513 at 2545.130 kb on + strand, within EX28DRAFT_2513 at 2545.287 kb on + strand at 2545.326 kb on + strand at 2545.354 kb on - strand at 2545.354 kb on - strand at 2545.355 kb on + strand at 2545.430 kb on - strand at 2545.784 kb on - strand at 2545.789 kb on + strand at 2545.822 kb on - strand, within EX28DRAFT_2515 at 2545.866 kb on - strand, within EX28DRAFT_2515 at 2545.866 kb on - strand, within EX28DRAFT_2515 at 2545.946 kb on - strand, within EX28DRAFT_2515 at 2546.095 kb on - strand at 2546.095 kb on - strand at 2546.096 kb on + strand at 2546.096 kb on + strand at 2546.097 kb on - strand at 2546.321 kb on - strand, within EX28DRAFT_2516 at 2546.352 kb on + strand, within EX28DRAFT_2516 at 2546.353 kb on - strand, within EX28DRAFT_2516 at 2546.353 kb on - strand, within EX28DRAFT_2516 at 2546.360 kb on + strand, within EX28DRAFT_2516 at 2546.457 kb on - strand, within EX28DRAFT_2516 at 2546.552 kb on - strand, within EX28DRAFT_2516 at 2546.633 kb on + strand at 2546.633 kb on + strand at 2546.634 kb on - strand at 2546.634 kb on - strand at 2546.634 kb on - strand at 2546.642 kb on + strand at 2546.642 kb on + strand at 2546.643 kb on - strand at 2546.643 kb on - strand at 2546.643 kb on - strand at 2546.723 kb on + strand at 2546.723 kb on + strand at 2546.723 kb on + strand at 2546.724 kb on - strand at 2546.821 kb on + strand at 2546.822 kb on - strand at 2546.822 kb on - strand at 2546.822 kb on - strand at 2546.822 kb on - strand at 2546.831 kb on - strand at 2546.831 kb on - strand at 2546.831 kb on - strand at 2546.862 kb on + strand at 2546.862 kb on + strand at 2546.862 kb on + strand at 2546.862 kb on + strand at 2546.862 kb on + strand at 2546.862 kb on + strand at 2546.862 kb on + strand at 2546.863 kb on + strand at 2546.863 kb on - strand at 2546.863 kb on - strand at 2546.863 kb on - strand at 2546.863 kb on - strand at 2546.863 kb on - strand at 2546.898 kb on - strand at 2546.954 kb on + strand, within EX28DRAFT_2517 at 2546.995 kb on + strand, within EX28DRAFT_2517 at 2546.996 kb on - strand, within EX28DRAFT_2517 at 2546.996 kb on - strand, within EX28DRAFT_2517 at 2547.049 kb on + strand, within EX28DRAFT_2517 at 2547.049 kb on + strand, within EX28DRAFT_2517 at 2547.049 kb on + strand, within EX28DRAFT_2517 at 2547.050 kb on - strand, within EX28DRAFT_2517 at 2547.050 kb on - strand, within EX28DRAFT_2517 at 2547.088 kb on + strand, within EX28DRAFT_2517
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,544,800 - -0.6 2,544,816 - -0.4 2,544,936 + EX28DRAFT_2512 0.64 -0.6 2,544,936 + EX28DRAFT_2512 0.64 -0.4 2,544,937 - EX28DRAFT_2512 0.64 +0.3 2,544,949 + EX28DRAFT_2512 0.70 -0.1 2,544,982 + EX28DRAFT_2512 0.85 +0.3 2,544,982 + EX28DRAFT_2512 0.85 +1.5 2,545,130 + EX28DRAFT_2513 0.48 -0.7 2,545,130 + EX28DRAFT_2513 0.48 -0.3 2,545,287 + -0.5 2,545,326 + +1.4 2,545,354 - +1.6 2,545,354 - +2.0 2,545,355 + +1.3 2,545,430 - -0.1 2,545,784 - +0.2 2,545,789 + -0.4 2,545,822 - EX28DRAFT_2515 0.10 -0.6 2,545,866 - EX28DRAFT_2515 0.24 -0.6 2,545,866 - EX28DRAFT_2515 0.24 -0.4 2,545,946 - EX28DRAFT_2515 0.50 +0.4 2,546,095 - +0.4 2,546,095 - -3.5 2,546,096 + +0.5 2,546,096 + -0.5 2,546,097 - -0.1 2,546,321 - EX28DRAFT_2516 0.35 -0.3 2,546,352 + EX28DRAFT_2516 0.41 -0.1 2,546,353 - EX28DRAFT_2516 0.41 -1.5 2,546,353 - EX28DRAFT_2516 0.41 -0.3 2,546,360 + EX28DRAFT_2516 0.43 -0.6 2,546,457 - EX28DRAFT_2516 0.61 -1.3 2,546,552 - EX28DRAFT_2516 0.79 +0.3 2,546,633 + -0.1 2,546,633 + -1.0 2,546,634 - -0.0 2,546,634 - -3.8 2,546,634 - -0.1 2,546,642 + +0.5 2,546,642 + +0.1 2,546,643 - +0.4 2,546,643 - +0.1 2,546,643 - -0.9 2,546,723 + +0.3 2,546,723 + +0.5 2,546,723 + +0.1 2,546,724 - -0.6 2,546,821 + +1.0 2,546,822 - -0.3 2,546,822 - -2.7 2,546,822 - +0.8 2,546,822 - -0.9 2,546,831 - -0.9 2,546,831 - +1.6 2,546,831 - -0.3 2,546,862 + -0.6 2,546,862 + +0.1 2,546,862 + -1.4 2,546,862 + +0.0 2,546,862 + -0.2 2,546,862 + -0.2 2,546,862 + -0.2 2,546,863 + -0.6 2,546,863 - -0.8 2,546,863 - -1.6 2,546,863 - +1.0 2,546,863 - -0.6 2,546,863 - +0.2 2,546,898 - -1.7 2,546,954 + EX28DRAFT_2517 0.11 +0.1 2,546,995 + EX28DRAFT_2517 0.15 -0.1 2,546,996 - EX28DRAFT_2517 0.15 -1.4 2,546,996 - EX28DRAFT_2517 0.15 -0.9 2,547,049 + EX28DRAFT_2517 0.22 -0.0 2,547,049 + EX28DRAFT_2517 0.22 -0.9 2,547,049 + EX28DRAFT_2517 0.22 -1.1 2,547,050 - EX28DRAFT_2517 0.22 +1.2 2,547,050 - EX28DRAFT_2517 0.22 -0.4 2,547,088 + EX28DRAFT_2517 0.26 +0.2
Or see this region's nucleotide sequence