Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2501 and EX28DRAFT_2502 are separated by 101 nucleotides EX28DRAFT_2502 and EX28DRAFT_2503 overlap by 4 nucleotides EX28DRAFT_2503 and EX28DRAFT_2504 are separated by 2 nucleotides EX28DRAFT_2504 and EX28DRAFT_2505 are separated by 218 nucleotides
EX28DRAFT_2501: EX28DRAFT_2501 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 2,532,535 to 2,533,995
_2501
EX28DRAFT_2502: EX28DRAFT_2502 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 2,534,097 to 2,534,807
_2502
EX28DRAFT_2503: EX28DRAFT_2503 - ribosomal protein L36, bacterial type, at 2,534,804 to 2,534,944
_2503
EX28DRAFT_2504: EX28DRAFT_2504 - ribosomal protein L31, at 2,534,947 to 2,535,207
_2504
EX28DRAFT_2505: EX28DRAFT_2505 - Predicted signal transduction protein containing sensor and EAL domains, at 2,535,426 to 2,536,991
_2505
Position (kb)
2534
2535 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2533.224 kb on + strand, within EX28DRAFT_2501 at 2533.283 kb on - strand, within EX28DRAFT_2501 at 2533.283 kb on - strand, within EX28DRAFT_2501 at 2533.315 kb on - strand, within EX28DRAFT_2501 at 2533.433 kb on - strand, within EX28DRAFT_2501 at 2533.529 kb on - strand, within EX28DRAFT_2501 at 2533.595 kb on + strand, within EX28DRAFT_2501 at 2533.596 kb on - strand, within EX28DRAFT_2501 at 2533.599 kb on + strand, within EX28DRAFT_2501 at 2533.600 kb on - strand, within EX28DRAFT_2501 at 2533.769 kb on + strand, within EX28DRAFT_2501 at 2533.770 kb on - strand, within EX28DRAFT_2501 at 2533.987 kb on + strand at 2533.988 kb on - strand at 2534.248 kb on - strand, within EX28DRAFT_2502 at 2534.509 kb on - strand, within EX28DRAFT_2502 at 2534.523 kb on + strand, within EX28DRAFT_2502 at 2534.524 kb on - strand, within EX28DRAFT_2502 at 2534.650 kb on + strand, within EX28DRAFT_2502 at 2534.849 kb on - strand, within EX28DRAFT_2503 at 2534.866 kb on - strand, within EX28DRAFT_2503 at 2534.889 kb on - strand, within EX28DRAFT_2503 at 2534.932 kb on + strand at 2534.932 kb on + strand at 2534.933 kb on - strand at 2534.937 kb on - strand at 2535.031 kb on - strand, within EX28DRAFT_2504 at 2535.077 kb on + strand, within EX28DRAFT_2504 at 2535.077 kb on + strand, within EX28DRAFT_2504 at 2535.078 kb on - strand, within EX28DRAFT_2504 at 2535.078 kb on - strand, within EX28DRAFT_2504 at 2535.121 kb on - strand, within EX28DRAFT_2504 at 2535.144 kb on - strand, within EX28DRAFT_2504 at 2535.144 kb on - strand, within EX28DRAFT_2504 at 2535.211 kb on - strand at 2535.230 kb on - strand at 2535.237 kb on - strand at 2535.237 kb on - strand at 2535.245 kb on - strand at 2535.248 kb on - strand at 2535.340 kb on - strand at 2535.343 kb on + strand at 2535.343 kb on + strand at 2535.343 kb on + strand at 2535.344 kb on - strand at 2535.405 kb on + strand at 2535.463 kb on + strand at 2535.464 kb on - strand at 2535.464 kb on - strand at 2535.468 kb on - strand at 2535.468 kb on - strand at 2535.552 kb on - strand at 2535.555 kb on + strand at 2535.555 kb on + strand at 2535.556 kb on - strand at 2535.556 kb on - strand at 2535.556 kb on - strand at 2535.647 kb on + strand, within EX28DRAFT_2505 at 2535.696 kb on + strand, within EX28DRAFT_2505 at 2535.696 kb on + strand, within EX28DRAFT_2505 at 2535.714 kb on + strand, within EX28DRAFT_2505 at 2535.714 kb on + strand, within EX28DRAFT_2505 at 2535.715 kb on - strand, within EX28DRAFT_2505 at 2535.715 kb on - strand, within EX28DRAFT_2505 at 2535.715 kb on - strand, within EX28DRAFT_2505 at 2535.716 kb on + strand, within EX28DRAFT_2505 at 2535.791 kb on + strand, within EX28DRAFT_2505 at 2535.795 kb on - strand, within EX28DRAFT_2505
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,533,224 + EX28DRAFT_2501 0.47 +0.7 2,533,283 - EX28DRAFT_2501 0.51 +0.0 2,533,283 - EX28DRAFT_2501 0.51 -0.1 2,533,315 - EX28DRAFT_2501 0.53 -0.9 2,533,433 - EX28DRAFT_2501 0.61 +1.4 2,533,529 - EX28DRAFT_2501 0.68 -0.5 2,533,595 + EX28DRAFT_2501 0.73 +0.2 2,533,596 - EX28DRAFT_2501 0.73 -0.5 2,533,599 + EX28DRAFT_2501 0.73 -3.4 2,533,600 - EX28DRAFT_2501 0.73 -0.8 2,533,769 + EX28DRAFT_2501 0.84 -1.7 2,533,770 - EX28DRAFT_2501 0.85 -0.3 2,533,987 + +0.2 2,533,988 - +0.6 2,534,248 - EX28DRAFT_2502 0.21 -1.1 2,534,509 - EX28DRAFT_2502 0.58 -0.1 2,534,523 + EX28DRAFT_2502 0.60 +1.0 2,534,524 - EX28DRAFT_2502 0.60 +0.4 2,534,650 + EX28DRAFT_2502 0.78 -1.0 2,534,849 - EX28DRAFT_2503 0.32 -0.0 2,534,866 - EX28DRAFT_2503 0.44 +0.2 2,534,889 - EX28DRAFT_2503 0.60 -0.3 2,534,932 + -0.2 2,534,932 + +0.5 2,534,933 - +0.9 2,534,937 - +0.1 2,535,031 - EX28DRAFT_2504 0.32 -0.2 2,535,077 + EX28DRAFT_2504 0.50 +0.1 2,535,077 + EX28DRAFT_2504 0.50 -0.1 2,535,078 - EX28DRAFT_2504 0.50 -0.0 2,535,078 - EX28DRAFT_2504 0.50 +0.1 2,535,121 - EX28DRAFT_2504 0.67 -0.4 2,535,144 - EX28DRAFT_2504 0.75 +0.5 2,535,144 - EX28DRAFT_2504 0.75 -0.9 2,535,211 - -0.4 2,535,230 - -0.8 2,535,237 - +0.5 2,535,237 - +1.4 2,535,245 - +0.4 2,535,248 - -0.2 2,535,340 - -0.7 2,535,343 + +0.4 2,535,343 + -0.9 2,535,343 + +0.1 2,535,344 - +0.4 2,535,405 + +0.7 2,535,463 + -0.4 2,535,464 - -0.9 2,535,464 - -0.9 2,535,468 - -1.6 2,535,468 - +1.0 2,535,552 - +1.0 2,535,555 + +0.9 2,535,555 + -1.3 2,535,556 - -0.9 2,535,556 - +0.1 2,535,556 - -0.6 2,535,647 + EX28DRAFT_2505 0.14 -1.4 2,535,696 + EX28DRAFT_2505 0.17 -0.9 2,535,696 + EX28DRAFT_2505 0.17 -1.0 2,535,714 + EX28DRAFT_2505 0.18 +0.4 2,535,714 + EX28DRAFT_2505 0.18 -1.1 2,535,715 - EX28DRAFT_2505 0.18 -0.3 2,535,715 - EX28DRAFT_2505 0.18 -0.2 2,535,715 - EX28DRAFT_2505 0.18 -0.1 2,535,716 + EX28DRAFT_2505 0.19 +3.4 2,535,791 + EX28DRAFT_2505 0.23 +0.5 2,535,795 - EX28DRAFT_2505 0.24 -1.4
Or see this region's nucleotide sequence