Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2474 and EX28DRAFT_2475 are separated by 50 nucleotides EX28DRAFT_2475 and EX28DRAFT_2476 overlap by 2 nucleotides EX28DRAFT_2476 and EX28DRAFT_2477 are separated by 122 nucleotides EX28DRAFT_2477 and EX28DRAFT_2478 are separated by 121 nucleotides
EX28DRAFT_2474: EX28DRAFT_2474 - copper-(or silver)-translocating P-type ATPase, at 2,502,128 to 2,504,626
_2474
EX28DRAFT_2475: EX28DRAFT_2475 - Uncharacterized protein conserved in bacteria, at 2,504,677 to 2,505,471
_2475
EX28DRAFT_2476: EX28DRAFT_2476 - RNA, at 2,505,470 to 2,505,548
_2476
EX28DRAFT_2477: EX28DRAFT_2477 - Cys-tRNA(Pro) deacylase, at 2,505,671 to 2,506,150
_2477
EX28DRAFT_2478: EX28DRAFT_2478 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 2,506,272 to 2,507,924
_2478
Position (kb)
2505
2506 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2504.471 kb on + strand at 2504.471 kb on + strand at 2504.471 kb on + strand at 2504.472 kb on - strand at 2504.473 kb on + strand at 2504.474 kb on - strand at 2504.474 kb on - strand at 2504.695 kb on - strand at 2504.696 kb on + strand at 2504.696 kb on + strand at 2504.814 kb on + strand, within EX28DRAFT_2475 at 2504.814 kb on + strand, within EX28DRAFT_2475 at 2504.815 kb on - strand, within EX28DRAFT_2475 at 2504.840 kb on + strand, within EX28DRAFT_2475 at 2504.841 kb on - strand, within EX28DRAFT_2475 at 2505.219 kb on + strand, within EX28DRAFT_2475 at 2505.337 kb on + strand, within EX28DRAFT_2475 at 2505.338 kb on - strand, within EX28DRAFT_2475 at 2505.338 kb on - strand, within EX28DRAFT_2475 at 2505.406 kb on + strand at 2505.406 kb on + strand at 2505.429 kb on - strand at 2505.437 kb on - strand at 2505.437 kb on - strand at 2505.484 kb on + strand, within EX28DRAFT_2476 at 2505.491 kb on - strand, within EX28DRAFT_2476 at 2505.491 kb on - strand, within EX28DRAFT_2476 at 2505.527 kb on - strand, within EX28DRAFT_2476 at 2505.527 kb on - strand, within EX28DRAFT_2476 at 2505.585 kb on + strand at 2505.588 kb on + strand at 2505.589 kb on - strand at 2505.606 kb on + strand at 2505.606 kb on + strand at 2505.630 kb on + strand at 2505.631 kb on - strand at 2505.631 kb on - strand at 2505.666 kb on + strand at 2505.666 kb on + strand at 2505.667 kb on - strand at 2505.667 kb on - strand at 2505.670 kb on + strand at 2505.670 kb on + strand at 2505.671 kb on - strand at 2505.671 kb on - strand at 2505.671 kb on - strand at 2505.728 kb on + strand, within EX28DRAFT_2477 at 2505.729 kb on - strand, within EX28DRAFT_2477 at 2505.752 kb on - strand, within EX28DRAFT_2477 at 2505.752 kb on - strand, within EX28DRAFT_2477 at 2506.047 kb on + strand, within EX28DRAFT_2477 at 2506.047 kb on + strand, within EX28DRAFT_2477 at 2506.047 kb on + strand, within EX28DRAFT_2477 at 2506.048 kb on - strand, within EX28DRAFT_2477 at 2506.051 kb on + strand, within EX28DRAFT_2477 at 2506.051 kb on + strand, within EX28DRAFT_2477 at 2506.051 kb on + strand, within EX28DRAFT_2477 at 2506.051 kb on + strand, within EX28DRAFT_2477 at 2506.052 kb on - strand, within EX28DRAFT_2477 at 2506.052 kb on - strand, within EX28DRAFT_2477 at 2506.179 kb on - strand at 2506.273 kb on + strand at 2506.395 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,504,471 + -1.3 2,504,471 + +0.8 2,504,471 + -0.8 2,504,472 - -1.3 2,504,473 + -0.8 2,504,474 - -2.2 2,504,474 - -1.6 2,504,695 - -0.3 2,504,696 + +0.7 2,504,696 + -0.7 2,504,814 + EX28DRAFT_2475 0.17 -1.4 2,504,814 + EX28DRAFT_2475 0.17 -0.3 2,504,815 - EX28DRAFT_2475 0.17 -0.0 2,504,840 + EX28DRAFT_2475 0.21 +0.6 2,504,841 - EX28DRAFT_2475 0.21 -0.5 2,505,219 + EX28DRAFT_2475 0.68 -0.4 2,505,337 + EX28DRAFT_2475 0.83 -0.4 2,505,338 - EX28DRAFT_2475 0.83 -1.5 2,505,338 - EX28DRAFT_2475 0.83 +0.4 2,505,406 + -0.8 2,505,406 + +0.1 2,505,429 - -0.1 2,505,437 - -1.5 2,505,437 - -1.2 2,505,484 + EX28DRAFT_2476 0.18 +0.3 2,505,491 - EX28DRAFT_2476 0.27 +1.0 2,505,491 - EX28DRAFT_2476 0.27 -0.0 2,505,527 - EX28DRAFT_2476 0.72 +0.9 2,505,527 - EX28DRAFT_2476 0.72 -1.3 2,505,585 + -0.1 2,505,588 + -0.2 2,505,589 - +1.4 2,505,606 + +0.5 2,505,606 + -0.1 2,505,630 + +1.7 2,505,631 - +0.3 2,505,631 - -0.5 2,505,666 + +0.5 2,505,666 + +0.5 2,505,667 - +0.7 2,505,667 - +0.7 2,505,670 + -0.2 2,505,670 + +0.3 2,505,671 - +0.3 2,505,671 - -1.0 2,505,671 - -0.8 2,505,728 + EX28DRAFT_2477 0.12 -1.1 2,505,729 - EX28DRAFT_2477 0.12 -1.0 2,505,752 - EX28DRAFT_2477 0.17 -0.6 2,505,752 - EX28DRAFT_2477 0.17 +0.3 2,506,047 + EX28DRAFT_2477 0.78 -0.0 2,506,047 + EX28DRAFT_2477 0.78 -1.7 2,506,047 + EX28DRAFT_2477 0.78 +0.1 2,506,048 - EX28DRAFT_2477 0.79 -0.3 2,506,051 + EX28DRAFT_2477 0.79 +0.2 2,506,051 + EX28DRAFT_2477 0.79 +0.1 2,506,051 + EX28DRAFT_2477 0.79 -1.4 2,506,051 + EX28DRAFT_2477 0.79 +0.3 2,506,052 - EX28DRAFT_2477 0.79 -1.7 2,506,052 - EX28DRAFT_2477 0.79 -0.1 2,506,179 - +3.2 2,506,273 + +0.3 2,506,395 - -0.3
Or see this region's nucleotide sequence