Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2424 and EX28DRAFT_2425 are separated by 19 nucleotides EX28DRAFT_2425 and EX28DRAFT_2426 are separated by 120 nucleotides EX28DRAFT_2426 and EX28DRAFT_2427 are separated by 404 nucleotides
EX28DRAFT_2424: EX28DRAFT_2424 - transcriptional regulator, TetR family, at 2,450,754 to 2,451,344
_2424
EX28DRAFT_2425: EX28DRAFT_2425 - Uncharacterized protein conserved in bacteria, at 2,451,364 to 2,451,702
_2425
EX28DRAFT_2426: EX28DRAFT_2426 - Nitroreductase, at 2,451,823 to 2,452,476
_2426
EX28DRAFT_2427: EX28DRAFT_2427 - filamentous hemagglutinin family N-terminal domain, at 2,452,881 to 2,455,514
_2427
Position (kb)
2451
2452
2453 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2451.005 kb on + strand, within EX28DRAFT_2424 at 2451.027 kb on + strand, within EX28DRAFT_2424 at 2451.027 kb on + strand, within EX28DRAFT_2424 at 2451.027 kb on + strand, within EX28DRAFT_2424 at 2451.028 kb on - strand, within EX28DRAFT_2424 at 2451.047 kb on + strand, within EX28DRAFT_2424 at 2451.175 kb on + strand, within EX28DRAFT_2424 at 2451.176 kb on - strand, within EX28DRAFT_2424 at 2451.179 kb on + strand, within EX28DRAFT_2424 at 2451.342 kb on + strand at 2451.342 kb on + strand at 2451.432 kb on + strand, within EX28DRAFT_2425 at 2451.745 kb on + strand at 2451.745 kb on + strand at 2451.828 kb on + strand at 2451.859 kb on - strand at 2451.929 kb on - strand, within EX28DRAFT_2426 at 2451.971 kb on + strand, within EX28DRAFT_2426 at 2451.972 kb on - strand, within EX28DRAFT_2426 at 2452.024 kb on + strand, within EX28DRAFT_2426 at 2452.025 kb on - strand, within EX28DRAFT_2426 at 2452.025 kb on - strand, within EX28DRAFT_2426 at 2452.025 kb on - strand, within EX28DRAFT_2426 at 2452.025 kb on - strand, within EX28DRAFT_2426 at 2452.025 kb on - strand, within EX28DRAFT_2426 at 2452.190 kb on - strand, within EX28DRAFT_2426 at 2452.190 kb on - strand, within EX28DRAFT_2426 at 2452.190 kb on - strand, within EX28DRAFT_2426 at 2452.522 kb on + strand at 2452.522 kb on + strand at 2452.523 kb on - strand at 2452.523 kb on - strand at 2452.523 kb on - strand at 2452.524 kb on + strand at 2452.539 kb on + strand at 2452.540 kb on - strand at 2452.540 kb on - strand at 2452.623 kb on + strand at 2452.624 kb on - strand at 2452.749 kb on + strand at 2452.818 kb on - strand at 2452.875 kb on - strand at 2452.875 kb on - strand at 2452.879 kb on - strand at 2452.881 kb on - strand at 2452.881 kb on - strand at 2452.913 kb on + strand at 2452.914 kb on - strand at 2452.928 kb on - strand at 2453.201 kb on + strand, within EX28DRAFT_2427 at 2453.204 kb on + strand, within EX28DRAFT_2427 at 2453.204 kb on + strand, within EX28DRAFT_2427 at 2453.205 kb on - strand, within EX28DRAFT_2427 at 2453.242 kb on + strand, within EX28DRAFT_2427 at 2453.243 kb on - strand, within EX28DRAFT_2427 at 2453.394 kb on + strand, within EX28DRAFT_2427 at 2453.395 kb on - strand, within EX28DRAFT_2427 at 2453.399 kb on + strand, within EX28DRAFT_2427 at 2453.433 kb on - strand, within EX28DRAFT_2427 at 2453.433 kb on - strand, within EX28DRAFT_2427
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,451,005 + EX28DRAFT_2424 0.42 +1.8 2,451,027 + EX28DRAFT_2424 0.46 -0.9 2,451,027 + EX28DRAFT_2424 0.46 -0.2 2,451,027 + EX28DRAFT_2424 0.46 +0.3 2,451,028 - EX28DRAFT_2424 0.46 -2.1 2,451,047 + EX28DRAFT_2424 0.50 -1.0 2,451,175 + EX28DRAFT_2424 0.71 -0.9 2,451,176 - EX28DRAFT_2424 0.71 -2.5 2,451,179 + EX28DRAFT_2424 0.72 -1.0 2,451,342 + -0.0 2,451,342 + +1.0 2,451,432 + EX28DRAFT_2425 0.20 -0.9 2,451,745 + -0.9 2,451,745 + +0.6 2,451,828 + +0.3 2,451,859 - -0.2 2,451,929 - EX28DRAFT_2426 0.16 -0.4 2,451,971 + EX28DRAFT_2426 0.23 -0.2 2,451,972 - EX28DRAFT_2426 0.23 +1.7 2,452,024 + EX28DRAFT_2426 0.31 -0.0 2,452,025 - EX28DRAFT_2426 0.31 +0.0 2,452,025 - EX28DRAFT_2426 0.31 -1.3 2,452,025 - EX28DRAFT_2426 0.31 +1.4 2,452,025 - EX28DRAFT_2426 0.31 +0.4 2,452,025 - EX28DRAFT_2426 0.31 +0.5 2,452,190 - EX28DRAFT_2426 0.56 -0.6 2,452,190 - EX28DRAFT_2426 0.56 +0.5 2,452,190 - EX28DRAFT_2426 0.56 +0.2 2,452,522 + -1.3 2,452,522 + +0.1 2,452,523 - +2.0 2,452,523 - -0.1 2,452,523 - +0.3 2,452,524 + -0.6 2,452,539 + +1.2 2,452,540 - -0.4 2,452,540 - +0.3 2,452,623 + -0.3 2,452,624 - +0.7 2,452,749 + -0.3 2,452,818 - -0.5 2,452,875 - -2.0 2,452,875 - +0.1 2,452,879 - +1.1 2,452,881 - +0.2 2,452,881 - -0.1 2,452,913 + -0.1 2,452,914 - -0.4 2,452,928 - +0.7 2,453,201 + EX28DRAFT_2427 0.12 -0.6 2,453,204 + EX28DRAFT_2427 0.12 +0.9 2,453,204 + EX28DRAFT_2427 0.12 -0.4 2,453,205 - EX28DRAFT_2427 0.12 -0.4 2,453,242 + EX28DRAFT_2427 0.14 -1.6 2,453,243 - EX28DRAFT_2427 0.14 +0.0 2,453,394 + EX28DRAFT_2427 0.19 +0.5 2,453,395 - EX28DRAFT_2427 0.20 +0.3 2,453,399 + EX28DRAFT_2427 0.20 +0.1 2,453,433 - EX28DRAFT_2427 0.21 -0.9 2,453,433 - EX28DRAFT_2427 0.21 +0.0
Or see this region's nucleotide sequence