Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2420 and EX28DRAFT_2421 are separated by 478 nucleotides EX28DRAFT_2421 and EX28DRAFT_2422 are separated by 82 nucleotides EX28DRAFT_2422 and EX28DRAFT_2423 overlap by 1 nucleotides
EX28DRAFT_2420: EX28DRAFT_2420 - ATPase, P-type (transporting), HAD superfamily, subfamily IC, at 2,445,568 to 2,448,276
_2420
EX28DRAFT_2421: EX28DRAFT_2421 - Protein of unknown function (DUF1158), at 2,448,755 to 2,449,003
_2421
EX28DRAFT_2422: EX28DRAFT_2422 - Helix-turn-helix domain, at 2,449,086 to 2,449,460
_2422
EX28DRAFT_2423: EX28DRAFT_2423 - Predicted Zn-dependent hydrolases of the beta-lactamase fold, at 2,449,460 to 2,450,527
_2423
Position (kb)
2448
2449
2450 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2447.769 kb on + strand, within EX28DRAFT_2420 at 2447.819 kb on - strand, within EX28DRAFT_2420 at 2447.826 kb on + strand, within EX28DRAFT_2420 at 2447.826 kb on + strand, within EX28DRAFT_2420 at 2447.908 kb on - strand, within EX28DRAFT_2420 at 2447.908 kb on - strand, within EX28DRAFT_2420 at 2447.916 kb on + strand, within EX28DRAFT_2420 at 2447.963 kb on - strand, within EX28DRAFT_2420 at 2448.001 kb on - strand, within EX28DRAFT_2420 at 2448.053 kb on + strand at 2448.070 kb on - strand at 2448.212 kb on - strand at 2448.334 kb on - strand at 2448.370 kb on - strand at 2448.561 kb on - strand at 2448.619 kb on + strand at 2448.659 kb on + strand at 2448.798 kb on + strand, within EX28DRAFT_2421 at 2448.906 kb on - strand, within EX28DRAFT_2421 at 2449.268 kb on - strand, within EX28DRAFT_2422 at 2449.298 kb on + strand, within EX28DRAFT_2422 at 2449.353 kb on + strand, within EX28DRAFT_2422 at 2449.353 kb on + strand, within EX28DRAFT_2422 at 2449.353 kb on + strand, within EX28DRAFT_2422 at 2449.354 kb on - strand, within EX28DRAFT_2422 at 2449.355 kb on + strand, within EX28DRAFT_2422 at 2449.355 kb on + strand, within EX28DRAFT_2422 at 2449.355 kb on + strand, within EX28DRAFT_2422 at 2449.355 kb on + strand, within EX28DRAFT_2422 at 2449.356 kb on - strand, within EX28DRAFT_2422 at 2449.356 kb on - strand, within EX28DRAFT_2422 at 2449.360 kb on - strand, within EX28DRAFT_2422 at 2449.462 kb on - strand at 2449.462 kb on - strand at 2449.591 kb on + strand, within EX28DRAFT_2423 at 2449.592 kb on - strand, within EX28DRAFT_2423 at 2449.692 kb on + strand, within EX28DRAFT_2423 at 2449.710 kb on + strand, within EX28DRAFT_2423 at 2449.801 kb on - strand, within EX28DRAFT_2423 at 2449.801 kb on - strand, within EX28DRAFT_2423 at 2449.801 kb on - strand, within EX28DRAFT_2423 at 2449.978 kb on - strand, within EX28DRAFT_2423
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,447,769 + EX28DRAFT_2420 0.81 -0.7 2,447,819 - EX28DRAFT_2420 0.83 -0.0 2,447,826 + EX28DRAFT_2420 0.83 -0.2 2,447,826 + EX28DRAFT_2420 0.83 +0.5 2,447,908 - EX28DRAFT_2420 0.86 -0.3 2,447,908 - EX28DRAFT_2420 0.86 +0.0 2,447,916 + EX28DRAFT_2420 0.87 +0.2 2,447,963 - EX28DRAFT_2420 0.88 +0.5 2,448,001 - EX28DRAFT_2420 0.90 +0.0 2,448,053 + +0.3 2,448,070 - -1.1 2,448,212 - +0.9 2,448,334 - +0.2 2,448,370 - -0.2 2,448,561 - -0.5 2,448,619 + +0.3 2,448,659 + -0.2 2,448,798 + EX28DRAFT_2421 0.17 -3.1 2,448,906 - EX28DRAFT_2421 0.61 -1.4 2,449,268 - EX28DRAFT_2422 0.49 -0.1 2,449,298 + EX28DRAFT_2422 0.57 -0.2 2,449,353 + EX28DRAFT_2422 0.71 +0.6 2,449,353 + EX28DRAFT_2422 0.71 -0.7 2,449,353 + EX28DRAFT_2422 0.71 -0.6 2,449,354 - EX28DRAFT_2422 0.71 +0.3 2,449,355 + EX28DRAFT_2422 0.72 +0.1 2,449,355 + EX28DRAFT_2422 0.72 +1.3 2,449,355 + EX28DRAFT_2422 0.72 -1.0 2,449,355 + EX28DRAFT_2422 0.72 -0.2 2,449,356 - EX28DRAFT_2422 0.72 +0.1 2,449,356 - EX28DRAFT_2422 0.72 +0.2 2,449,360 - EX28DRAFT_2422 0.73 -0.2 2,449,462 - -0.2 2,449,462 - -1.1 2,449,591 + EX28DRAFT_2423 0.12 +0.1 2,449,592 - EX28DRAFT_2423 0.12 -0.2 2,449,692 + EX28DRAFT_2423 0.22 -0.7 2,449,710 + EX28DRAFT_2423 0.23 -1.7 2,449,801 - EX28DRAFT_2423 0.32 -0.4 2,449,801 - EX28DRAFT_2423 0.32 -0.4 2,449,801 - EX28DRAFT_2423 0.32 +0.0 2,449,978 - EX28DRAFT_2423 0.49 +0.4
Or see this region's nucleotide sequence