Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2377 and EX28DRAFT_2378 overlap by 4 nucleotides EX28DRAFT_2378 and EX28DRAFT_2379 overlap by 4 nucleotides EX28DRAFT_2379 and EX28DRAFT_2380 are separated by 88 nucleotides
EX28DRAFT_2377: EX28DRAFT_2377 - ABC-type Fe3+-siderophore transport system, permease component, at 2,397,909 to 2,398,913
_2377
EX28DRAFT_2378: EX28DRAFT_2378 - ABC-type enterobactin transport system, permease component, at 2,398,910 to 2,399,902
_2378
EX28DRAFT_2379: EX28DRAFT_2379 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 2,399,899 to 2,400,699
_2379
EX28DRAFT_2380: EX28DRAFT_2380 - amino acid adenylation domain, at 2,400,788 to 2,404,645
_2380
Position (kb)
2399
2400
2401 Strain fitness (log2 ratio)
-1
0
1
2 at 2398.933 kb on - strand at 2399.088 kb on + strand, within EX28DRAFT_2378 at 2399.392 kb on + strand, within EX28DRAFT_2378 at 2399.549 kb on - strand, within EX28DRAFT_2378 at 2400.510 kb on - strand, within EX28DRAFT_2379 at 2400.619 kb on + strand, within EX28DRAFT_2379 at 2400.619 kb on + strand, within EX28DRAFT_2379 at 2400.640 kb on - strand at 2400.640 kb on - strand at 2401.011 kb on + strand at 2401.012 kb on - strand at 2401.263 kb on + strand, within EX28DRAFT_2380 at 2401.263 kb on + strand, within EX28DRAFT_2380 at 2401.263 kb on + strand, within EX28DRAFT_2380 at 2401.263 kb on + strand, within EX28DRAFT_2380 at 2401.264 kb on - strand, within EX28DRAFT_2380 at 2401.493 kb on - strand, within EX28DRAFT_2380 at 2401.579 kb on + strand, within EX28DRAFT_2380
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,398,933 - -0.5 2,399,088 + EX28DRAFT_2378 0.18 +0.3 2,399,392 + EX28DRAFT_2378 0.49 -0.3 2,399,549 - EX28DRAFT_2378 0.64 -0.7 2,400,510 - EX28DRAFT_2379 0.76 +0.0 2,400,619 + EX28DRAFT_2379 0.90 +1.0 2,400,619 + EX28DRAFT_2379 0.90 +1.0 2,400,640 - +0.2 2,400,640 - +0.1 2,401,011 + +0.9 2,401,012 - +2.2 2,401,263 + EX28DRAFT_2380 0.12 -0.0 2,401,263 + EX28DRAFT_2380 0.12 -1.0 2,401,263 + EX28DRAFT_2380 0.12 +0.2 2,401,263 + EX28DRAFT_2380 0.12 +0.1 2,401,264 - EX28DRAFT_2380 0.12 -0.1 2,401,493 - EX28DRAFT_2380 0.18 +0.1 2,401,579 + EX28DRAFT_2380 0.21 +0.2
Or see this region's nucleotide sequence