Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2275 and EX28DRAFT_2276 overlap by 7 nucleotides EX28DRAFT_2276 and EX28DRAFT_2277 are separated by 14 nucleotides EX28DRAFT_2277 and EX28DRAFT_2278 are separated by 10 nucleotides
EX28DRAFT_2275: EX28DRAFT_2275 - biotin-dependent carboxylase uncharacterized domain, at 2,298,557 to 2,299,489
_2275
EX28DRAFT_2276: EX28DRAFT_2276 - sensor histidine kinase inhibitor, KipI family, at 2,299,483 to 2,300,139
_2276
EX28DRAFT_2277: EX28DRAFT_2277 - dinuclear metal center protein, YbgI/SA1388 family, at 2,300,154 to 2,300,897
_2277
EX28DRAFT_2278: EX28DRAFT_2278 - Deoxyribodipyrimidine photolyase, at 2,300,908 to 2,302,320
_2278
Position (kb)
2300
2301 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2299.159 kb on + strand, within EX28DRAFT_2275 at 2299.159 kb on + strand, within EX28DRAFT_2275 at 2299.160 kb on - strand, within EX28DRAFT_2275 at 2299.308 kb on - strand, within EX28DRAFT_2275 at 2299.325 kb on - strand, within EX28DRAFT_2275 at 2299.407 kb on + strand at 2299.407 kb on + strand at 2299.408 kb on - strand at 2299.408 kb on - strand at 2299.451 kb on + strand at 2299.462 kb on - strand at 2299.490 kb on - strand at 2299.541 kb on - strand at 2299.591 kb on - strand, within EX28DRAFT_2276 at 2299.715 kb on - strand, within EX28DRAFT_2276 at 2299.728 kb on - strand, within EX28DRAFT_2276 at 2299.766 kb on + strand, within EX28DRAFT_2276 at 2299.859 kb on + strand, within EX28DRAFT_2276 at 2299.859 kb on + strand, within EX28DRAFT_2276 at 2299.938 kb on + strand, within EX28DRAFT_2276 at 2299.938 kb on + strand, within EX28DRAFT_2276 at 2299.938 kb on + strand, within EX28DRAFT_2276 at 2299.939 kb on - strand, within EX28DRAFT_2276 at 2299.939 kb on - strand, within EX28DRAFT_2276 at 2299.956 kb on + strand, within EX28DRAFT_2276 at 2299.982 kb on - strand, within EX28DRAFT_2276 at 2299.986 kb on + strand, within EX28DRAFT_2276 at 2299.987 kb on - strand, within EX28DRAFT_2276 at 2299.987 kb on - strand, within EX28DRAFT_2276 at 2300.053 kb on - strand, within EX28DRAFT_2276 at 2300.120 kb on + strand at 2300.141 kb on + strand at 2300.142 kb on - strand at 2300.142 kb on - strand at 2300.142 kb on - strand at 2300.145 kb on + strand at 2300.145 kb on + strand at 2300.145 kb on + strand at 2300.146 kb on - strand at 2300.384 kb on + strand, within EX28DRAFT_2277 at 2300.553 kb on + strand, within EX28DRAFT_2277 at 2300.617 kb on + strand, within EX28DRAFT_2277 at 2300.849 kb on + strand at 2300.850 kb on - strand at 2300.909 kb on + strand at 2300.910 kb on - strand at 2300.910 kb on - strand at 2300.996 kb on - strand at 2301.040 kb on - strand at 2301.040 kb on - strand at 2301.047 kb on - strand at 2301.054 kb on + strand, within EX28DRAFT_2278 at 2301.228 kb on - strand, within EX28DRAFT_2278 at 2301.282 kb on + strand, within EX28DRAFT_2278 at 2301.410 kb on - strand, within EX28DRAFT_2278 at 2301.410 kb on - strand, within EX28DRAFT_2278 at 2301.410 kb on - strand, within EX28DRAFT_2278 at 2301.410 kb on - strand, within EX28DRAFT_2278 at 2301.410 kb on - strand, within EX28DRAFT_2278 at 2301.444 kb on + strand, within EX28DRAFT_2278 at 2301.444 kb on + strand, within EX28DRAFT_2278 at 2301.445 kb on - strand, within EX28DRAFT_2278 at 2301.449 kb on - strand, within EX28DRAFT_2278 at 2301.462 kb on - strand, within EX28DRAFT_2278 at 2301.495 kb on + strand, within EX28DRAFT_2278 at 2301.496 kb on - strand, within EX28DRAFT_2278 at 2301.565 kb on + strand, within EX28DRAFT_2278 at 2301.566 kb on - strand, within EX28DRAFT_2278 at 2301.878 kb on + strand, within EX28DRAFT_2278
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,299,159 + EX28DRAFT_2275 0.65 -1.3 2,299,159 + EX28DRAFT_2275 0.65 -2.7 2,299,160 - EX28DRAFT_2275 0.65 -0.2 2,299,308 - EX28DRAFT_2275 0.80 +0.6 2,299,325 - EX28DRAFT_2275 0.82 -0.0 2,299,407 + -0.8 2,299,407 + +0.9 2,299,408 - +0.0 2,299,408 - +0.4 2,299,451 + +0.7 2,299,462 - -0.7 2,299,490 - -0.2 2,299,541 - +0.7 2,299,591 - EX28DRAFT_2276 0.16 -0.4 2,299,715 - EX28DRAFT_2276 0.35 +0.1 2,299,728 - EX28DRAFT_2276 0.37 +0.3 2,299,766 + EX28DRAFT_2276 0.43 +0.8 2,299,859 + EX28DRAFT_2276 0.57 +0.4 2,299,859 + EX28DRAFT_2276 0.57 -0.1 2,299,938 + EX28DRAFT_2276 0.69 +0.6 2,299,938 + EX28DRAFT_2276 0.69 -0.1 2,299,938 + EX28DRAFT_2276 0.69 -0.7 2,299,939 - EX28DRAFT_2276 0.69 -0.1 2,299,939 - EX28DRAFT_2276 0.69 -1.6 2,299,956 + EX28DRAFT_2276 0.72 +0.2 2,299,982 - EX28DRAFT_2276 0.76 +1.1 2,299,986 + EX28DRAFT_2276 0.77 -0.2 2,299,987 - EX28DRAFT_2276 0.77 +0.4 2,299,987 - EX28DRAFT_2276 0.77 +0.4 2,300,053 - EX28DRAFT_2276 0.87 +0.2 2,300,120 + -0.4 2,300,141 + +0.2 2,300,142 - -1.3 2,300,142 - +1.7 2,300,142 - -1.2 2,300,145 + -2.3 2,300,145 + -0.0 2,300,145 + -0.1 2,300,146 - -1.0 2,300,384 + EX28DRAFT_2277 0.31 -0.6 2,300,553 + EX28DRAFT_2277 0.54 -2.3 2,300,617 + EX28DRAFT_2277 0.62 +0.2 2,300,849 + +0.1 2,300,850 - +0.5 2,300,909 + -1.0 2,300,910 - -2.8 2,300,910 - -1.3 2,300,996 - -0.3 2,301,040 - -0.3 2,301,040 - -0.5 2,301,047 - -0.9 2,301,054 + EX28DRAFT_2278 0.10 +0.3 2,301,228 - EX28DRAFT_2278 0.23 -1.2 2,301,282 + EX28DRAFT_2278 0.26 -0.6 2,301,410 - EX28DRAFT_2278 0.36 +0.1 2,301,410 - EX28DRAFT_2278 0.36 +0.3 2,301,410 - EX28DRAFT_2278 0.36 -0.6 2,301,410 - EX28DRAFT_2278 0.36 -0.1 2,301,410 - EX28DRAFT_2278 0.36 +1.6 2,301,444 + EX28DRAFT_2278 0.38 -0.8 2,301,444 + EX28DRAFT_2278 0.38 -0.5 2,301,445 - EX28DRAFT_2278 0.38 +0.1 2,301,449 - EX28DRAFT_2278 0.38 -0.2 2,301,462 - EX28DRAFT_2278 0.39 -0.4 2,301,495 + EX28DRAFT_2278 0.42 -0.3 2,301,496 - EX28DRAFT_2278 0.42 +0.5 2,301,565 + EX28DRAFT_2278 0.46 +0.0 2,301,566 - EX28DRAFT_2278 0.47 +0.1 2,301,878 + EX28DRAFT_2278 0.69 -1.1
Or see this region's nucleotide sequence