Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2230

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2228 and EX28DRAFT_2229 are separated by 65 nucleotidesEX28DRAFT_2229 and EX28DRAFT_2230 are separated by 0 nucleotidesEX28DRAFT_2230 and EX28DRAFT_2231 are separated by 2 nucleotidesEX28DRAFT_2231 and EX28DRAFT_2232 overlap by 1 nucleotides EX28DRAFT_2228: EX28DRAFT_2228 - hypothetical protein, at 2,253,217 to 2,253,561 _2228 EX28DRAFT_2229: EX28DRAFT_2229 - haloacid dehalogenase-like hydrolase, at 2,253,627 to 2,254,172 _2229 EX28DRAFT_2230: EX28DRAFT_2230 - molybdenum ABC transporter, ATP-binding protein, at 2,254,173 to 2,255,231 _2230 EX28DRAFT_2231: EX28DRAFT_2231 - molybdate ABC transporter, permease protein, at 2,255,234 to 2,255,923 _2231 EX28DRAFT_2232: EX28DRAFT_2232 - molybdenum ABC transporter, periplasmic molybdate-binding protein, at 2,255,923 to 2,256,696 _2232 Position (kb) 2254 2255 2256Strain fitness (log2 ratio) -3 -2 -1 0 1at 2253.185 kb on + strandat 2253.218 kb on + strandat 2253.293 kb on + strand, within EX28DRAFT_2228at 2253.306 kb on + strand, within EX28DRAFT_2228at 2253.343 kb on + strand, within EX28DRAFT_2228at 2253.346 kb on - strand, within EX28DRAFT_2228at 2253.398 kb on + strand, within EX28DRAFT_2228at 2253.422 kb on + strand, within EX28DRAFT_2228at 2253.564 kb on + strandat 2253.613 kb on + strandat 2253.710 kb on - strand, within EX28DRAFT_2229at 2253.728 kb on - strand, within EX28DRAFT_2229at 2253.860 kb on + strand, within EX28DRAFT_2229at 2253.972 kb on + strand, within EX28DRAFT_2229at 2253.973 kb on - strand, within EX28DRAFT_2229at 2253.973 kb on - strand, within EX28DRAFT_2229at 2253.973 kb on - strand, within EX28DRAFT_2229at 2254.026 kb on + strand, within EX28DRAFT_2229at 2254.026 kb on + strand, within EX28DRAFT_2229at 2254.155 kb on + strandat 2254.155 kb on + strandat 2254.155 kb on + strandat 2254.156 kb on - strandat 2254.156 kb on - strandat 2254.197 kb on - strandat 2254.314 kb on - strand, within EX28DRAFT_2230at 2254.349 kb on + strand, within EX28DRAFT_2230at 2254.448 kb on + strand, within EX28DRAFT_2230at 2254.449 kb on - strand, within EX28DRAFT_2230at 2254.495 kb on + strand, within EX28DRAFT_2230at 2254.681 kb on + strand, within EX28DRAFT_2230at 2254.682 kb on - strand, within EX28DRAFT_2230at 2254.698 kb on - strand, within EX28DRAFT_2230at 2254.720 kb on - strand, within EX28DRAFT_2230at 2254.720 kb on - strand, within EX28DRAFT_2230at 2254.720 kb on - strand, within EX28DRAFT_2230at 2254.723 kb on + strand, within EX28DRAFT_2230at 2254.724 kb on - strand, within EX28DRAFT_2230at 2254.783 kb on - strand, within EX28DRAFT_2230at 2255.235 kb on + strandat 2255.235 kb on + strandat 2255.235 kb on + strandat 2255.236 kb on - strandat 2255.236 kb on - strandat 2255.314 kb on + strand, within EX28DRAFT_2231at 2255.317 kb on + strand, within EX28DRAFT_2231at 2255.365 kb on + strand, within EX28DRAFT_2231at 2255.367 kb on + strand, within EX28DRAFT_2231at 2255.367 kb on + strand, within EX28DRAFT_2231at 2255.368 kb on - strand, within EX28DRAFT_2231at 2255.476 kb on + strand, within EX28DRAFT_2231at 2255.733 kb on + strand, within EX28DRAFT_2231at 2255.879 kb on + strandat 2255.880 kb on - strandat 2255.918 kb on + strandat 2255.919 kb on - strandat 2256.012 kb on + strand, within EX28DRAFT_2232at 2256.038 kb on + strand, within EX28DRAFT_2232at 2256.085 kb on + strand, within EX28DRAFT_2232at 2256.085 kb on + strand, within EX28DRAFT_2232at 2256.094 kb on - strand, within EX28DRAFT_2232

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,253,185 + -1.0
2,253,218 + -0.9
2,253,293 + EX28DRAFT_2228 0.22 -0.0
2,253,306 + EX28DRAFT_2228 0.26 +0.2
2,253,343 + EX28DRAFT_2228 0.37 +0.1
2,253,346 - EX28DRAFT_2228 0.37 -0.2
2,253,398 + EX28DRAFT_2228 0.52 -3.0
2,253,422 + EX28DRAFT_2228 0.59 +0.0
2,253,564 + +0.1
2,253,613 + -0.2
2,253,710 - EX28DRAFT_2229 0.15 -0.0
2,253,728 - EX28DRAFT_2229 0.18 -0.1
2,253,860 + EX28DRAFT_2229 0.43 -0.1
2,253,972 + EX28DRAFT_2229 0.63 +0.2
2,253,973 - EX28DRAFT_2229 0.63 +0.2
2,253,973 - EX28DRAFT_2229 0.63 -0.3
2,253,973 - EX28DRAFT_2229 0.63 -0.6
2,254,026 + EX28DRAFT_2229 0.73 +0.0
2,254,026 + EX28DRAFT_2229 0.73 +0.6
2,254,155 + -1.5
2,254,155 + +0.4
2,254,155 + +0.6
2,254,156 - +0.6
2,254,156 - -0.5
2,254,197 - +0.5
2,254,314 - EX28DRAFT_2230 0.13 +0.4
2,254,349 + EX28DRAFT_2230 0.17 -0.1
2,254,448 + EX28DRAFT_2230 0.26 +0.0
2,254,449 - EX28DRAFT_2230 0.26 +0.0
2,254,495 + EX28DRAFT_2230 0.30 +0.2
2,254,681 + EX28DRAFT_2230 0.48 -0.3
2,254,682 - EX28DRAFT_2230 0.48 +0.2
2,254,698 - EX28DRAFT_2230 0.50 -0.3
2,254,720 - EX28DRAFT_2230 0.52 -3.1
2,254,720 - EX28DRAFT_2230 0.52 -3.3
2,254,720 - EX28DRAFT_2230 0.52 -0.4
2,254,723 + EX28DRAFT_2230 0.52 -0.6
2,254,724 - EX28DRAFT_2230 0.52 -0.3
2,254,783 - EX28DRAFT_2230 0.58 -0.6
2,255,235 + +0.3
2,255,235 + +0.5
2,255,235 + +0.5
2,255,236 - -1.2
2,255,236 - -0.2
2,255,314 + EX28DRAFT_2231 0.12 -0.1
2,255,317 + EX28DRAFT_2231 0.12 +0.3
2,255,365 + EX28DRAFT_2231 0.19 -0.0
2,255,367 + EX28DRAFT_2231 0.19 +0.8
2,255,367 + EX28DRAFT_2231 0.19 -0.0
2,255,368 - EX28DRAFT_2231 0.19 -0.0
2,255,476 + EX28DRAFT_2231 0.35 -0.2
2,255,733 + EX28DRAFT_2231 0.72 -1.6
2,255,879 + -1.6
2,255,880 - +0.1
2,255,918 + +0.3
2,255,919 - -0.5
2,256,012 + EX28DRAFT_2232 0.11 -0.4
2,256,038 + EX28DRAFT_2232 0.15 -2.9
2,256,085 + EX28DRAFT_2232 0.21 -1.5
2,256,085 + EX28DRAFT_2232 0.21 +1.6
2,256,094 - EX28DRAFT_2232 0.22 +0.0

Or see this region's nucleotide sequence