Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2227 and EX28DRAFT_2228 are separated by 843 nucleotides EX28DRAFT_2228 and EX28DRAFT_2229 are separated by 65 nucleotides EX28DRAFT_2229 and EX28DRAFT_2230 are separated by 0 nucleotides
EX28DRAFT_2227: EX28DRAFT_2227 - HAD-superfamily hydrolase, subfamily IIB, at 2,251,558 to 2,252,373
_2227
EX28DRAFT_2228: EX28DRAFT_2228 - hypothetical protein, at 2,253,217 to 2,253,561
_2228
EX28DRAFT_2229: EX28DRAFT_2229 - haloacid dehalogenase-like hydrolase, at 2,253,627 to 2,254,172
_2229
EX28DRAFT_2230: EX28DRAFT_2230 - molybdenum ABC transporter, ATP-binding protein, at 2,254,173 to 2,255,231
_2230
Position (kb)
2253
2254 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2252.240 kb on + strand, within EX28DRAFT_2227 at 2252.241 kb on - strand, within EX28DRAFT_2227 at 2252.245 kb on - strand, within EX28DRAFT_2227 at 2252.245 kb on - strand, within EX28DRAFT_2227 at 2252.316 kb on - strand at 2252.316 kb on - strand at 2252.325 kb on + strand at 2252.326 kb on - strand at 2252.371 kb on + strand at 2252.376 kb on + strand at 2252.389 kb on - strand at 2252.450 kb on - strand at 2252.523 kb on + strand at 2252.527 kb on + strand at 2252.528 kb on - strand at 2252.554 kb on - strand at 2252.683 kb on - strand at 2253.037 kb on + strand at 2253.082 kb on + strand at 2253.185 kb on + strand at 2253.218 kb on + strand at 2253.293 kb on + strand, within EX28DRAFT_2228 at 2253.306 kb on + strand, within EX28DRAFT_2228 at 2253.343 kb on + strand, within EX28DRAFT_2228 at 2253.346 kb on - strand, within EX28DRAFT_2228 at 2253.398 kb on + strand, within EX28DRAFT_2228 at 2253.422 kb on + strand, within EX28DRAFT_2228 at 2253.564 kb on + strand at 2253.613 kb on + strand at 2253.710 kb on - strand, within EX28DRAFT_2229 at 2253.728 kb on - strand, within EX28DRAFT_2229 at 2253.860 kb on + strand, within EX28DRAFT_2229 at 2253.972 kb on + strand, within EX28DRAFT_2229 at 2253.973 kb on - strand, within EX28DRAFT_2229 at 2253.973 kb on - strand, within EX28DRAFT_2229 at 2253.973 kb on - strand, within EX28DRAFT_2229 at 2254.026 kb on + strand, within EX28DRAFT_2229 at 2254.026 kb on + strand, within EX28DRAFT_2229 at 2254.155 kb on + strand at 2254.155 kb on + strand at 2254.155 kb on + strand at 2254.156 kb on - strand at 2254.156 kb on - strand at 2254.197 kb on - strand at 2254.314 kb on - strand, within EX28DRAFT_2230 at 2254.349 kb on + strand, within EX28DRAFT_2230 at 2254.448 kb on + strand, within EX28DRAFT_2230 at 2254.449 kb on - strand, within EX28DRAFT_2230 at 2254.495 kb on + strand, within EX28DRAFT_2230
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,252,240 + EX28DRAFT_2227 0.84 -0.1 2,252,241 - EX28DRAFT_2227 0.84 -1.2 2,252,245 - EX28DRAFT_2227 0.84 -0.9 2,252,245 - EX28DRAFT_2227 0.84 -0.3 2,252,316 - -0.1 2,252,316 - -2.2 2,252,325 + -0.2 2,252,326 - -2.9 2,252,371 + -0.7 2,252,376 + -0.1 2,252,389 - +0.1 2,252,450 - +0.4 2,252,523 + -0.7 2,252,527 + -0.2 2,252,528 - -0.4 2,252,554 - -0.6 2,252,683 - +0.4 2,253,037 + -0.7 2,253,082 + +0.4 2,253,185 + -1.0 2,253,218 + -0.9 2,253,293 + EX28DRAFT_2228 0.22 -0.0 2,253,306 + EX28DRAFT_2228 0.26 +0.2 2,253,343 + EX28DRAFT_2228 0.37 +0.1 2,253,346 - EX28DRAFT_2228 0.37 -0.2 2,253,398 + EX28DRAFT_2228 0.52 -3.0 2,253,422 + EX28DRAFT_2228 0.59 +0.0 2,253,564 + +0.1 2,253,613 + -0.2 2,253,710 - EX28DRAFT_2229 0.15 -0.0 2,253,728 - EX28DRAFT_2229 0.18 -0.1 2,253,860 + EX28DRAFT_2229 0.43 -0.1 2,253,972 + EX28DRAFT_2229 0.63 +0.2 2,253,973 - EX28DRAFT_2229 0.63 +0.2 2,253,973 - EX28DRAFT_2229 0.63 -0.3 2,253,973 - EX28DRAFT_2229 0.63 -0.6 2,254,026 + EX28DRAFT_2229 0.73 +0.0 2,254,026 + EX28DRAFT_2229 0.73 +0.6 2,254,155 + -1.5 2,254,155 + +0.4 2,254,155 + +0.6 2,254,156 - +0.6 2,254,156 - -0.5 2,254,197 - +0.5 2,254,314 - EX28DRAFT_2230 0.13 +0.4 2,254,349 + EX28DRAFT_2230 0.17 -0.1 2,254,448 + EX28DRAFT_2230 0.26 +0.0 2,254,449 - EX28DRAFT_2230 0.26 +0.0 2,254,495 + EX28DRAFT_2230 0.30 +0.2
Or see this region's nucleotide sequence