Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2228

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2227 and EX28DRAFT_2228 are separated by 843 nucleotidesEX28DRAFT_2228 and EX28DRAFT_2229 are separated by 65 nucleotidesEX28DRAFT_2229 and EX28DRAFT_2230 are separated by 0 nucleotides EX28DRAFT_2227: EX28DRAFT_2227 - HAD-superfamily hydrolase, subfamily IIB, at 2,251,558 to 2,252,373 _2227 EX28DRAFT_2228: EX28DRAFT_2228 - hypothetical protein, at 2,253,217 to 2,253,561 _2228 EX28DRAFT_2229: EX28DRAFT_2229 - haloacid dehalogenase-like hydrolase, at 2,253,627 to 2,254,172 _2229 EX28DRAFT_2230: EX28DRAFT_2230 - molybdenum ABC transporter, ATP-binding protein, at 2,254,173 to 2,255,231 _2230 Position (kb) 2253 2254Strain fitness (log2 ratio) -3 -2 -1 0 1at 2252.240 kb on + strand, within EX28DRAFT_2227at 2252.241 kb on - strand, within EX28DRAFT_2227at 2252.245 kb on - strand, within EX28DRAFT_2227at 2252.245 kb on - strand, within EX28DRAFT_2227at 2252.316 kb on - strandat 2252.316 kb on - strandat 2252.325 kb on + strandat 2252.326 kb on - strandat 2252.371 kb on + strandat 2252.376 kb on + strandat 2252.389 kb on - strandat 2252.450 kb on - strandat 2252.523 kb on + strandat 2252.527 kb on + strandat 2252.528 kb on - strandat 2252.554 kb on - strandat 2252.683 kb on - strandat 2253.037 kb on + strandat 2253.082 kb on + strandat 2253.185 kb on + strandat 2253.218 kb on + strandat 2253.293 kb on + strand, within EX28DRAFT_2228at 2253.306 kb on + strand, within EX28DRAFT_2228at 2253.343 kb on + strand, within EX28DRAFT_2228at 2253.346 kb on - strand, within EX28DRAFT_2228at 2253.398 kb on + strand, within EX28DRAFT_2228at 2253.422 kb on + strand, within EX28DRAFT_2228at 2253.564 kb on + strandat 2253.613 kb on + strandat 2253.710 kb on - strand, within EX28DRAFT_2229at 2253.728 kb on - strand, within EX28DRAFT_2229at 2253.860 kb on + strand, within EX28DRAFT_2229at 2253.972 kb on + strand, within EX28DRAFT_2229at 2253.973 kb on - strand, within EX28DRAFT_2229at 2253.973 kb on - strand, within EX28DRAFT_2229at 2253.973 kb on - strand, within EX28DRAFT_2229at 2254.026 kb on + strand, within EX28DRAFT_2229at 2254.026 kb on + strand, within EX28DRAFT_2229at 2254.155 kb on + strandat 2254.155 kb on + strandat 2254.155 kb on + strandat 2254.156 kb on - strandat 2254.156 kb on - strandat 2254.197 kb on - strandat 2254.314 kb on - strand, within EX28DRAFT_2230at 2254.349 kb on + strand, within EX28DRAFT_2230at 2254.448 kb on + strand, within EX28DRAFT_2230at 2254.449 kb on - strand, within EX28DRAFT_2230at 2254.495 kb on + strand, within EX28DRAFT_2230

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,252,240 + EX28DRAFT_2227 0.84 -0.1
2,252,241 - EX28DRAFT_2227 0.84 -1.2
2,252,245 - EX28DRAFT_2227 0.84 -0.9
2,252,245 - EX28DRAFT_2227 0.84 -0.3
2,252,316 - -0.1
2,252,316 - -2.2
2,252,325 + -0.2
2,252,326 - -2.9
2,252,371 + -0.7
2,252,376 + -0.1
2,252,389 - +0.1
2,252,450 - +0.4
2,252,523 + -0.7
2,252,527 + -0.2
2,252,528 - -0.4
2,252,554 - -0.6
2,252,683 - +0.4
2,253,037 + -0.7
2,253,082 + +0.4
2,253,185 + -1.0
2,253,218 + -0.9
2,253,293 + EX28DRAFT_2228 0.22 -0.0
2,253,306 + EX28DRAFT_2228 0.26 +0.2
2,253,343 + EX28DRAFT_2228 0.37 +0.1
2,253,346 - EX28DRAFT_2228 0.37 -0.2
2,253,398 + EX28DRAFT_2228 0.52 -3.0
2,253,422 + EX28DRAFT_2228 0.59 +0.0
2,253,564 + +0.1
2,253,613 + -0.2
2,253,710 - EX28DRAFT_2229 0.15 -0.0
2,253,728 - EX28DRAFT_2229 0.18 -0.1
2,253,860 + EX28DRAFT_2229 0.43 -0.1
2,253,972 + EX28DRAFT_2229 0.63 +0.2
2,253,973 - EX28DRAFT_2229 0.63 +0.2
2,253,973 - EX28DRAFT_2229 0.63 -0.3
2,253,973 - EX28DRAFT_2229 0.63 -0.6
2,254,026 + EX28DRAFT_2229 0.73 +0.0
2,254,026 + EX28DRAFT_2229 0.73 +0.6
2,254,155 + -1.5
2,254,155 + +0.4
2,254,155 + +0.6
2,254,156 - +0.6
2,254,156 - -0.5
2,254,197 - +0.5
2,254,314 - EX28DRAFT_2230 0.13 +0.4
2,254,349 + EX28DRAFT_2230 0.17 -0.1
2,254,448 + EX28DRAFT_2230 0.26 +0.0
2,254,449 - EX28DRAFT_2230 0.26 +0.0
2,254,495 + EX28DRAFT_2230 0.30 +0.2

Or see this region's nucleotide sequence