Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2185 and EX28DRAFT_2186 are separated by 168 nucleotides EX28DRAFT_2186 and EX28DRAFT_2187 are separated by 116 nucleotides EX28DRAFT_2187 and EX28DRAFT_2188 are separated by 266 nucleotides EX28DRAFT_2188 and EX28DRAFT_2189 are separated by 68 nucleotides
EX28DRAFT_2185: EX28DRAFT_2185 - transcriptional regulator, TraR/DksA family, at 2,207,728 to 2,207,994
_2185
EX28DRAFT_2186: EX28DRAFT_2186 - Protein of unknown function (DUF1471), at 2,208,163 to 2,208,540
_2186
EX28DRAFT_2187: EX28DRAFT_2187 - Anthranilate phosphoribosyltransferase, at 2,208,657 to 2,209,619
_2187
EX28DRAFT_2188: EX28DRAFT_2188 - P pilus assembly protein, pilin FimA, at 2,209,886 to 2,210,422
_2188
EX28DRAFT_2189: EX28DRAFT_2189 - P pilus assembly protein, chaperone PapD, at 2,210,491 to 2,211,165
_2189
Position (kb)
2208
2209
2210 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2207.959 kb on - strand, within EX28DRAFT_2185 at 2207.987 kb on + strand at 2208.113 kb on + strand at 2208.146 kb on - strand at 2208.221 kb on + strand, within EX28DRAFT_2186 at 2208.275 kb on + strand, within EX28DRAFT_2186 at 2208.296 kb on - strand, within EX28DRAFT_2186 at 2208.296 kb on - strand, within EX28DRAFT_2186 at 2208.363 kb on + strand, within EX28DRAFT_2186 at 2208.399 kb on - strand, within EX28DRAFT_2186 at 2208.487 kb on - strand, within EX28DRAFT_2186 at 2208.533 kb on - strand at 2208.538 kb on + strand at 2208.538 kb on + strand at 2208.801 kb on - strand, within EX28DRAFT_2187 at 2208.801 kb on - strand, within EX28DRAFT_2187 at 2208.801 kb on - strand, within EX28DRAFT_2187 at 2208.804 kb on - strand, within EX28DRAFT_2187 at 2208.969 kb on - strand, within EX28DRAFT_2187 at 2209.154 kb on + strand, within EX28DRAFT_2187 at 2209.156 kb on + strand, within EX28DRAFT_2187 at 2209.157 kb on - strand, within EX28DRAFT_2187 at 2209.209 kb on - strand, within EX28DRAFT_2187 at 2209.358 kb on - strand, within EX28DRAFT_2187 at 2209.424 kb on + strand, within EX28DRAFT_2187 at 2209.424 kb on + strand, within EX28DRAFT_2187 at 2209.432 kb on + strand, within EX28DRAFT_2187 at 2209.433 kb on - strand, within EX28DRAFT_2187 at 2209.535 kb on - strand at 2209.652 kb on - strand at 2209.909 kb on - strand at 2209.976 kb on - strand, within EX28DRAFT_2188 at 2210.188 kb on + strand, within EX28DRAFT_2188 at 2210.277 kb on + strand, within EX28DRAFT_2188 at 2210.277 kb on + strand, within EX28DRAFT_2188 at 2210.277 kb on + strand, within EX28DRAFT_2188 at 2210.278 kb on - strand, within EX28DRAFT_2188 at 2210.299 kb on + strand, within EX28DRAFT_2188 at 2210.299 kb on + strand, within EX28DRAFT_2188 at 2210.405 kb on - strand at 2210.465 kb on - strand at 2210.507 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,207,959 - EX28DRAFT_2185 0.87 +0.1 2,207,987 + -0.1 2,208,113 + -0.2 2,208,146 - -0.4 2,208,221 + EX28DRAFT_2186 0.15 -2.0 2,208,275 + EX28DRAFT_2186 0.30 -0.1 2,208,296 - EX28DRAFT_2186 0.35 -0.8 2,208,296 - EX28DRAFT_2186 0.35 +0.5 2,208,363 + EX28DRAFT_2186 0.53 +1.7 2,208,399 - EX28DRAFT_2186 0.62 -0.7 2,208,487 - EX28DRAFT_2186 0.86 -1.3 2,208,533 - +0.1 2,208,538 + +0.6 2,208,538 + -0.9 2,208,801 - EX28DRAFT_2187 0.15 -1.0 2,208,801 - EX28DRAFT_2187 0.15 -0.3 2,208,801 - EX28DRAFT_2187 0.15 +0.4 2,208,804 - EX28DRAFT_2187 0.15 +0.7 2,208,969 - EX28DRAFT_2187 0.32 +0.4 2,209,154 + EX28DRAFT_2187 0.52 -0.0 2,209,156 + EX28DRAFT_2187 0.52 -0.1 2,209,157 - EX28DRAFT_2187 0.52 +0.2 2,209,209 - EX28DRAFT_2187 0.57 +0.5 2,209,358 - EX28DRAFT_2187 0.73 -1.3 2,209,424 + EX28DRAFT_2187 0.80 -0.5 2,209,424 + EX28DRAFT_2187 0.80 -1.0 2,209,432 + EX28DRAFT_2187 0.80 -0.0 2,209,433 - EX28DRAFT_2187 0.81 -0.3 2,209,535 - -1.5 2,209,652 - +0.2 2,209,909 - +0.4 2,209,976 - EX28DRAFT_2188 0.17 +0.4 2,210,188 + EX28DRAFT_2188 0.56 +0.3 2,210,277 + EX28DRAFT_2188 0.73 +0.1 2,210,277 + EX28DRAFT_2188 0.73 +2.2 2,210,277 + EX28DRAFT_2188 0.73 +1.8 2,210,278 - EX28DRAFT_2188 0.73 -0.7 2,210,299 + EX28DRAFT_2188 0.77 +0.7 2,210,299 + EX28DRAFT_2188 0.77 -0.4 2,210,405 - +0.7 2,210,465 - +0.3 2,210,507 + -3.0
Or see this region's nucleotide sequence