Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2147 and EX28DRAFT_2148 are separated by 222 nucleotides EX28DRAFT_2148 and EX28DRAFT_2149 are separated by 42 nucleotides EX28DRAFT_2149 and EX28DRAFT_2150 are separated by 15 nucleotides
EX28DRAFT_2147: EX28DRAFT_2147 - ATPase components of ABC transporters with duplicated ATPase domains, at 2,170,944 to 2,172,539
_2147
EX28DRAFT_2148: EX28DRAFT_2148 - Uncharacterized protein conserved in bacteria, at 2,172,762 to 2,173,682
_2148
EX28DRAFT_2149: EX28DRAFT_2149 - Transcriptional regulators, at 2,173,725 to 2,174,441
_2149
EX28DRAFT_2150: EX28DRAFT_2150 - PTS system, lactose/cellobiose family IIC component, at 2,174,457 to 2,175,779
_2150
Position (kb)
2172
2173
2174 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2171.821 kb on + strand, within EX28DRAFT_2147 at 2171.821 kb on + strand, within EX28DRAFT_2147 at 2171.821 kb on + strand, within EX28DRAFT_2147 at 2171.821 kb on + strand, within EX28DRAFT_2147 at 2171.822 kb on - strand, within EX28DRAFT_2147 at 2171.830 kb on + strand, within EX28DRAFT_2147 at 2171.882 kb on + strand, within EX28DRAFT_2147 at 2172.172 kb on + strand, within EX28DRAFT_2147 at 2172.198 kb on - strand, within EX28DRAFT_2147 at 2172.199 kb on + strand, within EX28DRAFT_2147 at 2172.232 kb on + strand, within EX28DRAFT_2147 at 2172.233 kb on - strand, within EX28DRAFT_2147 at 2172.534 kb on + strand at 2172.534 kb on + strand at 2172.535 kb on - strand at 2172.535 kb on - strand at 2172.691 kb on + strand at 2172.691 kb on + strand at 2172.691 kb on + strand at 2172.691 kb on + strand at 2172.692 kb on - strand at 2172.692 kb on - strand at 2172.692 kb on - strand at 2172.693 kb on + strand at 2172.694 kb on - strand at 2172.694 kb on - strand at 2172.694 kb on - strand at 2172.722 kb on - strand at 2172.745 kb on + strand at 2172.745 kb on + strand at 2172.745 kb on + strand at 2172.746 kb on - strand at 2172.746 kb on - strand at 2172.746 kb on - strand at 2172.749 kb on + strand at 2172.749 kb on + strand at 2172.776 kb on - strand at 2172.925 kb on - strand, within EX28DRAFT_2148 at 2172.956 kb on + strand, within EX28DRAFT_2148 at 2172.990 kb on + strand, within EX28DRAFT_2148 at 2173.020 kb on - strand, within EX28DRAFT_2148 at 2173.092 kb on + strand, within EX28DRAFT_2148 at 2173.096 kb on - strand, within EX28DRAFT_2148 at 2173.096 kb on - strand, within EX28DRAFT_2148 at 2173.317 kb on + strand, within EX28DRAFT_2148 at 2173.506 kb on + strand, within EX28DRAFT_2148 at 2173.684 kb on - strand at 2173.783 kb on + strand at 2173.810 kb on + strand, within EX28DRAFT_2149 at 2173.810 kb on + strand, within EX28DRAFT_2149 at 2173.833 kb on + strand, within EX28DRAFT_2149 at 2173.946 kb on - strand, within EX28DRAFT_2149 at 2174.065 kb on + strand, within EX28DRAFT_2149 at 2174.066 kb on - strand, within EX28DRAFT_2149 at 2174.066 kb on - strand, within EX28DRAFT_2149 at 2174.066 kb on - strand, within EX28DRAFT_2149 at 2174.380 kb on + strand at 2174.381 kb on - strand at 2174.428 kb on + strand at 2174.429 kb on - strand at 2174.429 kb on - strand at 2174.429 kb on - strand at 2174.518 kb on + strand at 2174.518 kb on + strand at 2174.660 kb on + strand, within EX28DRAFT_2150 at 2174.660 kb on + strand, within EX28DRAFT_2150
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,171,821 + EX28DRAFT_2147 0.55 +0.8 2,171,821 + EX28DRAFT_2147 0.55 +0.3 2,171,821 + EX28DRAFT_2147 0.55 +0.6 2,171,821 + EX28DRAFT_2147 0.55 -1.8 2,171,822 - EX28DRAFT_2147 0.55 +0.4 2,171,830 + EX28DRAFT_2147 0.56 -0.3 2,171,882 + EX28DRAFT_2147 0.59 -0.6 2,172,172 + EX28DRAFT_2147 0.77 +0.3 2,172,198 - EX28DRAFT_2147 0.79 -0.2 2,172,199 + EX28DRAFT_2147 0.79 +0.3 2,172,232 + EX28DRAFT_2147 0.81 -0.1 2,172,233 - EX28DRAFT_2147 0.81 -0.4 2,172,534 + -0.4 2,172,534 + -1.7 2,172,535 - +0.8 2,172,535 - -2.0 2,172,691 + -0.5 2,172,691 + +0.8 2,172,691 + -0.2 2,172,691 + -0.2 2,172,692 - +0.3 2,172,692 - -1.4 2,172,692 - +0.3 2,172,693 + -1.3 2,172,694 - +0.2 2,172,694 - +0.8 2,172,694 - +1.9 2,172,722 - -0.0 2,172,745 + +0.8 2,172,745 + -0.4 2,172,745 + -0.0 2,172,746 - +0.5 2,172,746 - -1.2 2,172,746 - -0.4 2,172,749 + +0.3 2,172,749 + +1.1 2,172,776 - -0.6 2,172,925 - EX28DRAFT_2148 0.18 +1.9 2,172,956 + EX28DRAFT_2148 0.21 -0.4 2,172,990 + EX28DRAFT_2148 0.25 +1.2 2,173,020 - EX28DRAFT_2148 0.28 +0.4 2,173,092 + EX28DRAFT_2148 0.36 +0.3 2,173,096 - EX28DRAFT_2148 0.36 +0.4 2,173,096 - EX28DRAFT_2148 0.36 +0.1 2,173,317 + EX28DRAFT_2148 0.60 +1.4 2,173,506 + EX28DRAFT_2148 0.81 +0.0 2,173,684 - +0.2 2,173,783 + -0.1 2,173,810 + EX28DRAFT_2149 0.12 -1.1 2,173,810 + EX28DRAFT_2149 0.12 -2.7 2,173,833 + EX28DRAFT_2149 0.15 -0.6 2,173,946 - EX28DRAFT_2149 0.31 -0.3 2,174,065 + EX28DRAFT_2149 0.47 +1.2 2,174,066 - EX28DRAFT_2149 0.48 -0.1 2,174,066 - EX28DRAFT_2149 0.48 -0.0 2,174,066 - EX28DRAFT_2149 0.48 -1.2 2,174,380 + -0.4 2,174,381 - -0.1 2,174,428 + -0.7 2,174,429 - +0.2 2,174,429 - -0.7 2,174,429 - +0.1 2,174,518 + -0.1 2,174,518 + +0.2 2,174,660 + EX28DRAFT_2150 0.15 -0.6 2,174,660 + EX28DRAFT_2150 0.15 +0.9
Or see this region's nucleotide sequence