Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2127 and EX28DRAFT_2128 are separated by 240 nucleotides EX28DRAFT_2128 and EX28DRAFT_2129 are separated by 0 nucleotides EX28DRAFT_2129 and EX28DRAFT_2130 are separated by 107 nucleotides EX28DRAFT_2130 and EX28DRAFT_2131 are separated by 216 nucleotides
EX28DRAFT_2127: EX28DRAFT_2127 - D-alanyl-D-alanine carboxypeptidase, at 2,145,451 to 2,146,656
_2127
EX28DRAFT_2128: EX28DRAFT_2128 - Glutathione S-transferase, at 2,146,897 to 2,147,523
_2128
EX28DRAFT_2129: EX28DRAFT_2129 - Glucose/sorbosone dehydrogenases, at 2,147,524 to 2,148,642
_2129
EX28DRAFT_2130: EX28DRAFT_2130 - Biofilm formation protein (YliH/bssR), at 2,148,750 to 2,149,133
_2130
EX28DRAFT_2131: EX28DRAFT_2131 - ribosomal protein S12 methylthiotransferase RimO, at 2,149,350 to 2,150,675
_2131
Position (kb)
2147
2148
2149 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6
7 at 2146.656 kb on + strand at 2146.656 kb on + strand at 2146.657 kb on - strand at 2146.657 kb on - strand at 2146.720 kb on + strand at 2146.720 kb on + strand at 2146.783 kb on - strand at 2146.832 kb on + strand at 2146.845 kb on + strand at 2146.846 kb on - strand at 2146.892 kb on + strand at 2146.893 kb on - strand at 2146.893 kb on - strand at 2146.893 kb on - strand at 2146.896 kb on + strand at 2146.896 kb on + strand at 2146.897 kb on - strand at 2146.897 kb on - strand at 2146.897 kb on - strand at 2147.026 kb on + strand, within EX28DRAFT_2128 at 2147.026 kb on + strand, within EX28DRAFT_2128 at 2147.248 kb on - strand, within EX28DRAFT_2128 at 2147.344 kb on - strand, within EX28DRAFT_2128 at 2147.582 kb on + strand at 2147.583 kb on - strand at 2147.583 kb on - strand at 2147.583 kb on - strand at 2147.583 kb on - strand at 2147.584 kb on + strand at 2147.584 kb on + strand at 2147.584 kb on + strand at 2147.584 kb on + strand at 2147.584 kb on + strand at 2147.584 kb on + strand at 2147.585 kb on - strand at 2147.585 kb on - strand at 2147.585 kb on - strand at 2147.585 kb on - strand at 2147.585 kb on - strand at 2147.585 kb on - strand at 2147.620 kb on - strand at 2147.620 kb on - strand at 2147.861 kb on + strand, within EX28DRAFT_2129 at 2147.861 kb on + strand, within EX28DRAFT_2129 at 2147.862 kb on - strand, within EX28DRAFT_2129 at 2147.866 kb on - strand, within EX28DRAFT_2129 at 2147.894 kb on + strand, within EX28DRAFT_2129 at 2148.112 kb on - strand, within EX28DRAFT_2129 at 2148.141 kb on + strand, within EX28DRAFT_2129 at 2148.265 kb on - strand, within EX28DRAFT_2129 at 2148.504 kb on + strand, within EX28DRAFT_2129 at 2148.505 kb on - strand, within EX28DRAFT_2129 at 2148.642 kb on + strand at 2148.671 kb on - strand at 2148.719 kb on - strand at 2148.883 kb on - strand, within EX28DRAFT_2130 at 2149.034 kb on + strand, within EX28DRAFT_2130 at 2149.034 kb on + strand, within EX28DRAFT_2130 at 2149.035 kb on - strand, within EX28DRAFT_2130 at 2149.035 kb on - strand, within EX28DRAFT_2130 at 2149.035 kb on - strand, within EX28DRAFT_2130 at 2149.036 kb on + strand, within EX28DRAFT_2130 at 2149.037 kb on - strand, within EX28DRAFT_2130 at 2149.037 kb on - strand, within EX28DRAFT_2130 at 2149.037 kb on - strand, within EX28DRAFT_2130 at 2149.164 kb on + strand at 2149.233 kb on - strand at 2149.236 kb on + strand at 2149.237 kb on - strand at 2149.237 kb on - strand at 2149.282 kb on + strand at 2149.283 kb on - strand at 2149.283 kb on - strand at 2149.283 kb on - strand at 2149.284 kb on + strand at 2149.284 kb on + strand at 2149.285 kb on - strand at 2149.285 kb on - strand at 2149.298 kb on + strand at 2149.305 kb on + strand at 2149.330 kb on - strand at 2149.474 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,146,656 + +0.7 2,146,656 + +0.0 2,146,657 - +2.0 2,146,657 - -0.4 2,146,720 + -0.2 2,146,720 + +7.1 2,146,783 - +0.7 2,146,832 + -0.0 2,146,845 + -0.8 2,146,846 - +0.8 2,146,892 + -0.3 2,146,893 - -0.6 2,146,893 - +0.5 2,146,893 - -0.9 2,146,896 + +0.3 2,146,896 + +1.8 2,146,897 - +0.6 2,146,897 - +1.9 2,146,897 - -0.2 2,147,026 + EX28DRAFT_2128 0.21 +0.5 2,147,026 + EX28DRAFT_2128 0.21 -0.4 2,147,248 - EX28DRAFT_2128 0.56 -0.3 2,147,344 - EX28DRAFT_2128 0.71 -1.0 2,147,582 + -1.1 2,147,583 - -0.4 2,147,583 - +1.0 2,147,583 - -2.2 2,147,583 - -0.8 2,147,584 + -0.6 2,147,584 + +1.1 2,147,584 + -0.0 2,147,584 + -0.3 2,147,584 + +0.1 2,147,584 + -0.1 2,147,585 - +0.0 2,147,585 - -0.2 2,147,585 - -1.7 2,147,585 - -0.2 2,147,585 - -2.5 2,147,585 - +0.0 2,147,620 - +0.1 2,147,620 - -1.0 2,147,861 + EX28DRAFT_2129 0.30 +0.3 2,147,861 + EX28DRAFT_2129 0.30 -1.4 2,147,862 - EX28DRAFT_2129 0.30 -0.2 2,147,866 - EX28DRAFT_2129 0.31 -2.3 2,147,894 + EX28DRAFT_2129 0.33 -0.7 2,148,112 - EX28DRAFT_2129 0.53 -0.5 2,148,141 + EX28DRAFT_2129 0.55 -1.6 2,148,265 - EX28DRAFT_2129 0.66 -0.5 2,148,504 + EX28DRAFT_2129 0.88 -0.2 2,148,505 - EX28DRAFT_2129 0.88 -0.4 2,148,642 + -0.8 2,148,671 - -0.6 2,148,719 - -0.2 2,148,883 - EX28DRAFT_2130 0.35 +0.2 2,149,034 + EX28DRAFT_2130 0.74 +0.0 2,149,034 + EX28DRAFT_2130 0.74 -0.1 2,149,035 - EX28DRAFT_2130 0.74 +0.4 2,149,035 - EX28DRAFT_2130 0.74 +0.1 2,149,035 - EX28DRAFT_2130 0.74 +0.8 2,149,036 + EX28DRAFT_2130 0.74 -0.2 2,149,037 - EX28DRAFT_2130 0.75 -0.8 2,149,037 - EX28DRAFT_2130 0.75 +0.3 2,149,037 - EX28DRAFT_2130 0.75 -0.3 2,149,164 + -0.2 2,149,233 - +0.5 2,149,236 + -3.8 2,149,237 - -0.6 2,149,237 - -0.0 2,149,282 + -1.0 2,149,283 - -0.3 2,149,283 - +0.2 2,149,283 - +0.4 2,149,284 + -0.5 2,149,284 + +0.1 2,149,285 - -0.0 2,149,285 - +2.2 2,149,298 + -0.4 2,149,305 + -0.6 2,149,330 - -1.3 2,149,474 - -0.2
Or see this region's nucleotide sequence