Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2096

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2094 and EX28DRAFT_2095 are separated by 40 nucleotidesEX28DRAFT_2095 and EX28DRAFT_2096 are separated by 65 nucleotidesEX28DRAFT_2096 and EX28DRAFT_2097 overlap by 4 nucleotidesEX28DRAFT_2097 and EX28DRAFT_2098 are separated by 9 nucleotides EX28DRAFT_2094: EX28DRAFT_2094 - 23S rRNA (uracil-5-)-methyltransferase RumB, at 2,118,149 to 2,119,279 _2094 EX28DRAFT_2095: EX28DRAFT_2095 - Protein of unknown function (DUF2593), at 2,119,320 to 2,119,793 _2095 EX28DRAFT_2096: EX28DRAFT_2096 - ABC-type spermidine/putrescine transport system, permease component II, at 2,119,859 to 2,120,704 _2096 EX28DRAFT_2097: EX28DRAFT_2097 - ABC-type spermidine/putrescine transport system, permease component I, at 2,120,701 to 2,121,654 _2097 EX28DRAFT_2098: EX28DRAFT_2098 - spermidine/putrescine ABC transporter ATP-binding subunit, at 2,121,664 to 2,122,797 _2098 Position (kb) 2119 2120 2121Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2119.108 kb on + strand, within EX28DRAFT_2094at 2119.229 kb on + strandat 2119.263 kb on + strandat 2119.280 kb on - strandat 2119.314 kb on + strandat 2119.314 kb on + strandat 2119.314 kb on + strandat 2119.315 kb on - strandat 2119.321 kb on + strandat 2119.489 kb on + strand, within EX28DRAFT_2095at 2119.709 kb on + strand, within EX28DRAFT_2095at 2119.710 kb on - strand, within EX28DRAFT_2095at 2119.710 kb on - strand, within EX28DRAFT_2095at 2119.710 kb on - strand, within EX28DRAFT_2095at 2119.712 kb on + strand, within EX28DRAFT_2095at 2119.746 kb on + strandat 2119.746 kb on + strandat 2119.747 kb on - strandat 2119.747 kb on - strandat 2119.752 kb on - strandat 2119.766 kb on + strandat 2119.766 kb on + strandat 2119.767 kb on - strandat 2119.767 kb on - strandat 2119.767 kb on - strandat 2119.770 kb on - strandat 2119.799 kb on + strandat 2119.963 kb on + strand, within EX28DRAFT_2096at 2119.963 kb on + strand, within EX28DRAFT_2096at 2119.964 kb on - strand, within EX28DRAFT_2096at 2120.244 kb on + strand, within EX28DRAFT_2096at 2120.244 kb on + strand, within EX28DRAFT_2096at 2120.245 kb on - strand, within EX28DRAFT_2096at 2120.252 kb on - strand, within EX28DRAFT_2096at 2120.393 kb on - strand, within EX28DRAFT_2096at 2120.550 kb on + strand, within EX28DRAFT_2096at 2120.551 kb on - strand, within EX28DRAFT_2096at 2120.608 kb on - strand, within EX28DRAFT_2096at 2120.608 kb on - strand, within EX28DRAFT_2096at 2120.635 kb on - strandat 2120.694 kb on - strandat 2121.021 kb on - strand, within EX28DRAFT_2097at 2121.021 kb on - strand, within EX28DRAFT_2097at 2121.071 kb on + strand, within EX28DRAFT_2097at 2121.077 kb on + strand, within EX28DRAFT_2097at 2121.077 kb on + strand, within EX28DRAFT_2097at 2121.077 kb on + strand, within EX28DRAFT_2097at 2121.078 kb on - strand, within EX28DRAFT_2097at 2121.093 kb on - strand, within EX28DRAFT_2097at 2121.093 kb on - strand, within EX28DRAFT_2097at 2121.256 kb on - strand, within EX28DRAFT_2097at 2121.259 kb on - strand, within EX28DRAFT_2097at 2121.259 kb on - strand, within EX28DRAFT_2097at 2121.372 kb on - strand, within EX28DRAFT_2097at 2121.456 kb on + strand, within EX28DRAFT_2097at 2121.493 kb on + strand, within EX28DRAFT_2097at 2121.545 kb on + strand, within EX28DRAFT_2097at 2121.666 kb on - strandat 2121.666 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
2,119,108 + EX28DRAFT_2094 0.85 -0.2
2,119,229 + +0.3
2,119,263 + -0.5
2,119,280 - -2.3
2,119,314 + -0.5
2,119,314 + -0.7
2,119,314 + +1.3
2,119,315 - +0.2
2,119,321 + -0.8
2,119,489 + EX28DRAFT_2095 0.36 -0.2
2,119,709 + EX28DRAFT_2095 0.82 +0.2
2,119,710 - EX28DRAFT_2095 0.82 +0.6
2,119,710 - EX28DRAFT_2095 0.82 +0.5
2,119,710 - EX28DRAFT_2095 0.82 +0.4
2,119,712 + EX28DRAFT_2095 0.83 +0.9
2,119,746 + +0.3
2,119,746 + +0.6
2,119,747 - -0.4
2,119,747 - +0.9
2,119,752 - +0.7
2,119,766 + +0.1
2,119,766 + -0.0
2,119,767 - -0.2
2,119,767 - -0.5
2,119,767 - -0.1
2,119,770 - -2.7
2,119,799 + -0.4
2,119,963 + EX28DRAFT_2096 0.12 -2.0
2,119,963 + EX28DRAFT_2096 0.12 +0.4
2,119,964 - EX28DRAFT_2096 0.12 -2.2
2,120,244 + EX28DRAFT_2096 0.46 +0.3
2,120,244 + EX28DRAFT_2096 0.46 +2.5
2,120,245 - EX28DRAFT_2096 0.46 +0.0
2,120,252 - EX28DRAFT_2096 0.46 -0.5
2,120,393 - EX28DRAFT_2096 0.63 -1.4
2,120,550 + EX28DRAFT_2096 0.82 +0.4
2,120,551 - EX28DRAFT_2096 0.82 -0.4
2,120,608 - EX28DRAFT_2096 0.89 -1.2
2,120,608 - EX28DRAFT_2096 0.89 +0.3
2,120,635 - -0.3
2,120,694 - -0.1
2,121,021 - EX28DRAFT_2097 0.34 -0.5
2,121,021 - EX28DRAFT_2097 0.34 +0.0
2,121,071 + EX28DRAFT_2097 0.39 -0.2
2,121,077 + EX28DRAFT_2097 0.39 +0.7
2,121,077 + EX28DRAFT_2097 0.39 +0.3
2,121,077 + EX28DRAFT_2097 0.39 -0.4
2,121,078 - EX28DRAFT_2097 0.40 +0.1
2,121,093 - EX28DRAFT_2097 0.41 -4.1
2,121,093 - EX28DRAFT_2097 0.41 +0.5
2,121,256 - EX28DRAFT_2097 0.58 +0.1
2,121,259 - EX28DRAFT_2097 0.58 -0.7
2,121,259 - EX28DRAFT_2097 0.58 +0.2
2,121,372 - EX28DRAFT_2097 0.70 -0.1
2,121,456 + EX28DRAFT_2097 0.79 -1.6
2,121,493 + EX28DRAFT_2097 0.83 -1.0
2,121,545 + EX28DRAFT_2097 0.88 -0.2
2,121,666 - +0.0
2,121,666 - -2.3

Or see this region's nucleotide sequence