Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2081 and EX28DRAFT_2082 overlap by 1 nucleotides EX28DRAFT_2082 and EX28DRAFT_2083 are separated by 17 nucleotides EX28DRAFT_2083 and EX28DRAFT_2084 are separated by 258 nucleotides
EX28DRAFT_2081: EX28DRAFT_2081 - Type II secretory pathway, component ExeA (predicted ATPase), at 2,106,935 to 2,108,509
_2081
EX28DRAFT_2082: EX28DRAFT_2082 - hypothetical protein, at 2,108,509 to 2,109,123
_2082
EX28DRAFT_2083: EX28DRAFT_2083 - hypothetical protein, at 2,109,141 to 2,109,764
_2083
EX28DRAFT_2084: EX28DRAFT_2084 - Negative regulator of beta-lactamase expression, at 2,110,023 to 2,110,853
_2084
Position (kb)
2109
2110 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2108.174 kb on - strand, within EX28DRAFT_2081 at 2108.195 kb on + strand, within EX28DRAFT_2081 at 2108.408 kb on - strand at 2108.421 kb on + strand at 2108.452 kb on - strand at 2108.470 kb on + strand at 2108.470 kb on + strand at 2108.470 kb on + strand at 2108.470 kb on + strand at 2108.471 kb on - strand at 2108.471 kb on - strand at 2108.473 kb on - strand at 2108.473 kb on - strand at 2108.473 kb on - strand at 2108.520 kb on + strand at 2108.520 kb on + strand at 2108.605 kb on - strand, within EX28DRAFT_2082 at 2108.605 kb on - strand, within EX28DRAFT_2082 at 2108.749 kb on + strand, within EX28DRAFT_2082 at 2108.749 kb on + strand, within EX28DRAFT_2082 at 2108.750 kb on - strand, within EX28DRAFT_2082 at 2108.750 kb on - strand, within EX28DRAFT_2082 at 2108.750 kb on - strand, within EX28DRAFT_2082 at 2108.756 kb on - strand, within EX28DRAFT_2082 at 2108.892 kb on + strand, within EX28DRAFT_2082 at 2108.906 kb on + strand, within EX28DRAFT_2082 at 2109.416 kb on + strand, within EX28DRAFT_2083 at 2109.416 kb on + strand, within EX28DRAFT_2083 at 2109.512 kb on - strand, within EX28DRAFT_2083 at 2109.512 kb on - strand, within EX28DRAFT_2083 at 2109.515 kb on + strand, within EX28DRAFT_2083 at 2109.516 kb on - strand, within EX28DRAFT_2083 at 2109.554 kb on + strand, within EX28DRAFT_2083 at 2109.579 kb on - strand, within EX28DRAFT_2083 at 2109.635 kb on + strand, within EX28DRAFT_2083 at 2109.635 kb on + strand, within EX28DRAFT_2083 at 2109.659 kb on + strand, within EX28DRAFT_2083 at 2109.884 kb on - strand at 2109.901 kb on - strand at 2109.952 kb on + strand at 2109.996 kb on + strand at 2109.996 kb on + strand at 2110.334 kb on + strand, within EX28DRAFT_2084 at 2110.397 kb on + strand, within EX28DRAFT_2084 at 2110.639 kb on + strand, within EX28DRAFT_2084 at 2110.702 kb on + strand, within EX28DRAFT_2084 at 2110.722 kb on + strand, within EX28DRAFT_2084 at 2110.722 kb on + strand, within EX28DRAFT_2084 at 2110.723 kb on - strand, within EX28DRAFT_2084
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,108,174 - EX28DRAFT_2081 0.79 +0.2 2,108,195 + EX28DRAFT_2081 0.80 +0.1 2,108,408 - -1.9 2,108,421 + +0.5 2,108,452 - -0.1 2,108,470 + +0.6 2,108,470 + +0.3 2,108,470 + +0.3 2,108,470 + -0.2 2,108,471 - +1.0 2,108,471 - +0.7 2,108,473 - +1.2 2,108,473 - +2.5 2,108,473 - -0.1 2,108,520 + +0.5 2,108,520 + -0.3 2,108,605 - EX28DRAFT_2082 0.16 +0.7 2,108,605 - EX28DRAFT_2082 0.16 -1.7 2,108,749 + EX28DRAFT_2082 0.39 -0.1 2,108,749 + EX28DRAFT_2082 0.39 -0.8 2,108,750 - EX28DRAFT_2082 0.39 +0.6 2,108,750 - EX28DRAFT_2082 0.39 -0.6 2,108,750 - EX28DRAFT_2082 0.39 -0.2 2,108,756 - EX28DRAFT_2082 0.40 -1.2 2,108,892 + EX28DRAFT_2082 0.62 -0.0 2,108,906 + EX28DRAFT_2082 0.65 +1.0 2,109,416 + EX28DRAFT_2083 0.44 -1.6 2,109,416 + EX28DRAFT_2083 0.44 -0.5 2,109,512 - EX28DRAFT_2083 0.59 -0.5 2,109,512 - EX28DRAFT_2083 0.59 -0.1 2,109,515 + EX28DRAFT_2083 0.60 -2.3 2,109,516 - EX28DRAFT_2083 0.60 -0.5 2,109,554 + EX28DRAFT_2083 0.66 -2.1 2,109,579 - EX28DRAFT_2083 0.70 +0.5 2,109,635 + EX28DRAFT_2083 0.79 +0.2 2,109,635 + EX28DRAFT_2083 0.79 +1.9 2,109,659 + EX28DRAFT_2083 0.83 +0.2 2,109,884 - -0.2 2,109,901 - -0.5 2,109,952 + -1.0 2,109,996 + +1.3 2,109,996 + +0.4 2,110,334 + EX28DRAFT_2084 0.37 +0.2 2,110,397 + EX28DRAFT_2084 0.45 +0.9 2,110,639 + EX28DRAFT_2084 0.74 -0.6 2,110,702 + EX28DRAFT_2084 0.82 -0.5 2,110,722 + EX28DRAFT_2084 0.84 +0.1 2,110,722 + EX28DRAFT_2084 0.84 -0.7 2,110,723 - EX28DRAFT_2084 0.84 +1.0
Or see this region's nucleotide sequence