Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2064

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2063 and EX28DRAFT_2064 are separated by 10 nucleotidesEX28DRAFT_2064 and EX28DRAFT_2065 are separated by 92 nucleotides EX28DRAFT_2063: EX28DRAFT_2063 - L-threonine aldolase (EC 4.1.2.5), at 2,086,671 to 2,087,672 _2063 EX28DRAFT_2064: EX28DRAFT_2064 - Predicted nucleoside-diphosphate-sugar epimerases, at 2,087,683 to 2,089,119 _2064 EX28DRAFT_2065: EX28DRAFT_2065 - Nucleoside-diphosphate-sugar epimerases, at 2,089,212 to 2,090,225 _2065 Position (kb) 2087 2088 2089 2090Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2086.896 kb on + strand, within EX28DRAFT_2063at 2086.896 kb on + strand, within EX28DRAFT_2063at 2086.923 kb on + strand, within EX28DRAFT_2063at 2086.923 kb on + strand, within EX28DRAFT_2063at 2086.923 kb on + strand, within EX28DRAFT_2063at 2086.923 kb on + strand, within EX28DRAFT_2063at 2086.923 kb on + strand, within EX28DRAFT_2063at 2086.924 kb on - strand, within EX28DRAFT_2063at 2086.924 kb on - strand, within EX28DRAFT_2063at 2086.924 kb on - strand, within EX28DRAFT_2063at 2086.924 kb on - strand, within EX28DRAFT_2063at 2086.924 kb on - strand, within EX28DRAFT_2063at 2086.924 kb on - strand, within EX28DRAFT_2063at 2087.112 kb on + strand, within EX28DRAFT_2063at 2087.112 kb on + strand, within EX28DRAFT_2063at 2087.177 kb on + strand, within EX28DRAFT_2063at 2087.200 kb on - strand, within EX28DRAFT_2063at 2087.307 kb on + strand, within EX28DRAFT_2063at 2087.307 kb on + strand, within EX28DRAFT_2063at 2087.366 kb on + strand, within EX28DRAFT_2063at 2087.389 kb on - strand, within EX28DRAFT_2063at 2087.601 kb on - strandat 2087.601 kb on - strandat 2087.719 kb on + strandat 2087.720 kb on - strandat 2087.722 kb on - strandat 2087.896 kb on + strand, within EX28DRAFT_2064at 2087.897 kb on - strand, within EX28DRAFT_2064at 2087.932 kb on - strand, within EX28DRAFT_2064at 2088.250 kb on + strand, within EX28DRAFT_2064at 2088.250 kb on + strand, within EX28DRAFT_2064at 2088.326 kb on - strand, within EX28DRAFT_2064at 2089.122 kb on - strandat 2089.211 kb on + strandat 2089.211 kb on + strandat 2089.539 kb on - strand, within EX28DRAFT_2065at 2089.544 kb on + strand, within EX28DRAFT_2065at 2089.544 kb on + strand, within EX28DRAFT_2065at 2089.545 kb on - strand, within EX28DRAFT_2065at 2089.545 kb on - strand, within EX28DRAFT_2065at 2089.692 kb on - strand, within EX28DRAFT_2065at 2089.692 kb on - strand, within EX28DRAFT_2065at 2089.749 kb on - strand, within EX28DRAFT_2065at 2089.779 kb on + strand, within EX28DRAFT_2065at 2089.830 kb on + strand, within EX28DRAFT_2065at 2089.831 kb on - strand, within EX28DRAFT_2065at 2089.831 kb on - strand, within EX28DRAFT_2065at 2089.831 kb on - strand, within EX28DRAFT_2065at 2089.905 kb on + strand, within EX28DRAFT_2065at 2089.905 kb on + strand, within EX28DRAFT_2065at 2089.905 kb on + strand, within EX28DRAFT_2065at 2089.957 kb on + strand, within EX28DRAFT_2065at 2090.049 kb on - strand, within EX28DRAFT_2065at 2090.087 kb on - strand, within EX28DRAFT_2065at 2090.097 kb on - strand, within EX28DRAFT_2065

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,086,896 + EX28DRAFT_2063 0.22 -0.7
2,086,896 + EX28DRAFT_2063 0.22 -0.7
2,086,923 + EX28DRAFT_2063 0.25 -0.1
2,086,923 + EX28DRAFT_2063 0.25 +0.5
2,086,923 + EX28DRAFT_2063 0.25 -0.1
2,086,923 + EX28DRAFT_2063 0.25 -0.0
2,086,923 + EX28DRAFT_2063 0.25 +1.0
2,086,924 - EX28DRAFT_2063 0.25 +0.3
2,086,924 - EX28DRAFT_2063 0.25 -0.0
2,086,924 - EX28DRAFT_2063 0.25 +1.4
2,086,924 - EX28DRAFT_2063 0.25 -1.9
2,086,924 - EX28DRAFT_2063 0.25 -3.5
2,086,924 - EX28DRAFT_2063 0.25 +1.7
2,087,112 + EX28DRAFT_2063 0.44 +0.4
2,087,112 + EX28DRAFT_2063 0.44 -1.4
2,087,177 + EX28DRAFT_2063 0.50 +0.7
2,087,200 - EX28DRAFT_2063 0.53 -0.4
2,087,307 + EX28DRAFT_2063 0.63 -0.1
2,087,307 + EX28DRAFT_2063 0.63 +0.2
2,087,366 + EX28DRAFT_2063 0.69 +0.5
2,087,389 - EX28DRAFT_2063 0.72 -0.1
2,087,601 - -0.3
2,087,601 - +0.7
2,087,719 + +0.2
2,087,720 - +0.6
2,087,722 - +0.9
2,087,896 + EX28DRAFT_2064 0.15 +0.1
2,087,897 - EX28DRAFT_2064 0.15 +0.6
2,087,932 - EX28DRAFT_2064 0.17 +0.4
2,088,250 + EX28DRAFT_2064 0.39 +0.1
2,088,250 + EX28DRAFT_2064 0.39 -0.1
2,088,326 - EX28DRAFT_2064 0.45 +0.3
2,089,122 - +0.2
2,089,211 + -1.5
2,089,211 + +3.7
2,089,539 - EX28DRAFT_2065 0.32 -2.7
2,089,544 + EX28DRAFT_2065 0.33 +0.9
2,089,544 + EX28DRAFT_2065 0.33 -0.4
2,089,545 - EX28DRAFT_2065 0.33 -0.1
2,089,545 - EX28DRAFT_2065 0.33 -0.0
2,089,692 - EX28DRAFT_2065 0.47 -0.0
2,089,692 - EX28DRAFT_2065 0.47 -0.4
2,089,749 - EX28DRAFT_2065 0.53 +0.3
2,089,779 + EX28DRAFT_2065 0.56 +0.2
2,089,830 + EX28DRAFT_2065 0.61 +0.8
2,089,831 - EX28DRAFT_2065 0.61 -1.1
2,089,831 - EX28DRAFT_2065 0.61 -0.3
2,089,831 - EX28DRAFT_2065 0.61 +0.8
2,089,905 + EX28DRAFT_2065 0.68 -0.8
2,089,905 + EX28DRAFT_2065 0.68 +1.2
2,089,905 + EX28DRAFT_2065 0.68 +0.6
2,089,957 + EX28DRAFT_2065 0.73 +1.3
2,090,049 - EX28DRAFT_2065 0.83 -1.9
2,090,087 - EX28DRAFT_2065 0.86 -0.5
2,090,097 - EX28DRAFT_2065 0.87 -0.4

Or see this region's nucleotide sequence