Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2054 and EX28DRAFT_2055 are separated by 159 nucleotides EX28DRAFT_2055 and EX28DRAFT_2056 overlap by 4 nucleotides
EX28DRAFT_2054: EX28DRAFT_2054 - RND family efflux transporter, MFP subunit, at 2,075,438 to 2,076,553
_2054
EX28DRAFT_2055: EX28DRAFT_2055 - Uncharacterized protein conserved in bacteria, at 2,076,713 to 2,077,669
_2055
EX28DRAFT_2056: EX28DRAFT_2056 - Predicted ATP-dependent endonuclease of the OLD family, at 2,077,666 to 2,079,324
_2056
Position (kb)
2076
2077
2078 Strain fitness (log2 ratio)
-2
-1
0
1 at 2075.727 kb on + strand, within EX28DRAFT_2054 at 2075.728 kb on - strand, within EX28DRAFT_2054 at 2075.728 kb on - strand, within EX28DRAFT_2054 at 2075.730 kb on + strand, within EX28DRAFT_2054 at 2075.730 kb on + strand, within EX28DRAFT_2054 at 2075.730 kb on + strand, within EX28DRAFT_2054 at 2075.737 kb on + strand, within EX28DRAFT_2054 at 2075.819 kb on - strand, within EX28DRAFT_2054 at 2075.842 kb on + strand, within EX28DRAFT_2054 at 2075.842 kb on + strand, within EX28DRAFT_2054 at 2076.113 kb on - strand, within EX28DRAFT_2054 at 2076.113 kb on - strand, within EX28DRAFT_2054 at 2076.116 kb on + strand, within EX28DRAFT_2054 at 2076.134 kb on - strand, within EX28DRAFT_2054 at 2076.448 kb on - strand at 2076.497 kb on + strand at 2076.553 kb on + strand at 2076.558 kb on - strand at 2076.567 kb on - strand at 2076.584 kb on + strand at 2076.689 kb on - strand at 2076.709 kb on + strand at 2076.710 kb on - strand at 2076.710 kb on - strand at 2076.710 kb on - strand at 2076.710 kb on - strand at 2077.228 kb on + strand, within EX28DRAFT_2055 at 2077.432 kb on + strand, within EX28DRAFT_2055 at 2077.433 kb on - strand, within EX28DRAFT_2055 at 2077.433 kb on - strand, within EX28DRAFT_2055 at 2077.433 kb on - strand, within EX28DRAFT_2055 at 2077.433 kb on - strand, within EX28DRAFT_2055 at 2077.540 kb on + strand, within EX28DRAFT_2055 at 2077.541 kb on - strand, within EX28DRAFT_2055 at 2077.893 kb on - strand, within EX28DRAFT_2056 at 2077.896 kb on + strand, within EX28DRAFT_2056 at 2077.896 kb on + strand, within EX28DRAFT_2056 at 2077.896 kb on + strand, within EX28DRAFT_2056 at 2077.897 kb on - strand, within EX28DRAFT_2056 at 2077.897 kb on - strand, within EX28DRAFT_2056 at 2077.897 kb on - strand, within EX28DRAFT_2056 at 2077.897 kb on - strand, within EX28DRAFT_2056 at 2077.989 kb on - strand, within EX28DRAFT_2056 at 2078.368 kb on - strand, within EX28DRAFT_2056
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,075,727 + EX28DRAFT_2054 0.26 -0.6 2,075,728 - EX28DRAFT_2054 0.26 -2.0 2,075,728 - EX28DRAFT_2054 0.26 +0.9 2,075,730 + EX28DRAFT_2054 0.26 +0.5 2,075,730 + EX28DRAFT_2054 0.26 +0.1 2,075,730 + EX28DRAFT_2054 0.26 -0.5 2,075,737 + EX28DRAFT_2054 0.27 +0.2 2,075,819 - EX28DRAFT_2054 0.34 +0.0 2,075,842 + EX28DRAFT_2054 0.36 -2.5 2,075,842 + EX28DRAFT_2054 0.36 -0.7 2,076,113 - EX28DRAFT_2054 0.60 -0.7 2,076,113 - EX28DRAFT_2054 0.60 +0.1 2,076,116 + EX28DRAFT_2054 0.61 +0.1 2,076,134 - EX28DRAFT_2054 0.62 +0.9 2,076,448 - -0.3 2,076,497 + +1.2 2,076,553 + -2.5 2,076,558 - +0.5 2,076,567 - -0.0 2,076,584 + +0.2 2,076,689 - +0.9 2,076,709 + -1.3 2,076,710 - +0.2 2,076,710 - -0.1 2,076,710 - -0.7 2,076,710 - -0.3 2,077,228 + EX28DRAFT_2055 0.54 -0.9 2,077,432 + EX28DRAFT_2055 0.75 -1.9 2,077,433 - EX28DRAFT_2055 0.75 -0.2 2,077,433 - EX28DRAFT_2055 0.75 +0.1 2,077,433 - EX28DRAFT_2055 0.75 -0.6 2,077,433 - EX28DRAFT_2055 0.75 +0.5 2,077,540 + EX28DRAFT_2055 0.86 -0.7 2,077,541 - EX28DRAFT_2055 0.87 -0.3 2,077,893 - EX28DRAFT_2056 0.14 -1.5 2,077,896 + EX28DRAFT_2056 0.14 -2.1 2,077,896 + EX28DRAFT_2056 0.14 -1.8 2,077,896 + EX28DRAFT_2056 0.14 -0.9 2,077,897 - EX28DRAFT_2056 0.14 -0.5 2,077,897 - EX28DRAFT_2056 0.14 -0.5 2,077,897 - EX28DRAFT_2056 0.14 -0.5 2,077,897 - EX28DRAFT_2056 0.14 +1.2 2,077,989 - EX28DRAFT_2056 0.19 -0.4 2,078,368 - EX28DRAFT_2056 0.42 -1.0
Or see this region's nucleotide sequence