Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1998 and EX28DRAFT_1999 are separated by 248 nucleotides EX28DRAFT_1999 and EX28DRAFT_2000 overlap by 8 nucleotides EX28DRAFT_2000 and EX28DRAFT_2001 overlap by 4 nucleotides
EX28DRAFT_1998: EX28DRAFT_1998 - dihydroorotate oxidase A (EC 1.3.3.1), at 2,001,635 to 2,002,645
_1998
EX28DRAFT_1999: EX28DRAFT_1999 - FMN reductase, SsuE family, at 2,002,894 to 2,003,469
_1999
EX28DRAFT_2000: EX28DRAFT_2000 - ABC transporter, substrate-binding protein, aliphatic sulfonates family, at 2,003,462 to 2,004,424
_2000
EX28DRAFT_2001: EX28DRAFT_2001 - alkanesulfonate monooxygenase (EC 1.14.14.5), at 2,004,421 to 2,005,566
_2001
Position (kb)
2002
2003
2004 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2002.893 kb on + strand at 2002.893 kb on + strand at 2002.893 kb on + strand at 2002.893 kb on + strand at 2002.893 kb on + strand at 2002.894 kb on - strand at 2002.894 kb on - strand at 2002.894 kb on - strand at 2002.906 kb on - strand at 2002.958 kb on - strand, within EX28DRAFT_1999 at 2003.013 kb on + strand, within EX28DRAFT_1999 at 2003.119 kb on - strand, within EX28DRAFT_1999 at 2003.122 kb on + strand, within EX28DRAFT_1999 at 2003.122 kb on + strand, within EX28DRAFT_1999 at 2003.122 kb on + strand, within EX28DRAFT_1999 at 2003.123 kb on - strand, within EX28DRAFT_1999 at 2003.123 kb on - strand, within EX28DRAFT_1999 at 2003.123 kb on - strand, within EX28DRAFT_1999 at 2003.234 kb on + strand, within EX28DRAFT_1999 at 2003.340 kb on + strand, within EX28DRAFT_1999 at 2003.340 kb on + strand, within EX28DRAFT_1999 at 2003.340 kb on + strand, within EX28DRAFT_1999 at 2003.341 kb on - strand, within EX28DRAFT_1999 at 2003.341 kb on - strand, within EX28DRAFT_1999 at 2003.467 kb on + strand at 2003.468 kb on - strand at 2003.509 kb on + strand at 2003.509 kb on + strand at 2003.762 kb on + strand, within EX28DRAFT_2000 at 2003.762 kb on + strand, within EX28DRAFT_2000 at 2003.763 kb on - strand, within EX28DRAFT_2000 at 2003.763 kb on - strand, within EX28DRAFT_2000 at 2003.763 kb on - strand, within EX28DRAFT_2000 at 2003.827 kb on + strand, within EX28DRAFT_2000 at 2003.827 kb on + strand, within EX28DRAFT_2000 at 2003.828 kb on - strand, within EX28DRAFT_2000 at 2003.845 kb on + strand, within EX28DRAFT_2000 at 2004.116 kb on + strand, within EX28DRAFT_2000 at 2004.140 kb on - strand, within EX28DRAFT_2000 at 2004.157 kb on + strand, within EX28DRAFT_2000 at 2004.157 kb on + strand, within EX28DRAFT_2000 at 2004.257 kb on + strand, within EX28DRAFT_2000 at 2004.258 kb on - strand, within EX28DRAFT_2000 at 2004.258 kb on - strand, within EX28DRAFT_2000 at 2004.286 kb on + strand, within EX28DRAFT_2000 at 2004.287 kb on - strand, within EX28DRAFT_2000 at 2004.341 kb on + strand at 2004.374 kb on - strand at 2004.416 kb on - strand at 2004.416 kb on - strand at 2004.446 kb on + strand at 2004.469 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,002,893 + -0.5 2,002,893 + +0.5 2,002,893 + +0.1 2,002,893 + +0.8 2,002,893 + +1.1 2,002,894 - -0.9 2,002,894 - -0.0 2,002,894 - -0.5 2,002,906 - -3.9 2,002,958 - EX28DRAFT_1999 0.11 +1.3 2,003,013 + EX28DRAFT_1999 0.21 +0.4 2,003,119 - EX28DRAFT_1999 0.39 +1.2 2,003,122 + EX28DRAFT_1999 0.40 -0.5 2,003,122 + EX28DRAFT_1999 0.40 +1.6 2,003,122 + EX28DRAFT_1999 0.40 +0.1 2,003,123 - EX28DRAFT_1999 0.40 +0.1 2,003,123 - EX28DRAFT_1999 0.40 +0.7 2,003,123 - EX28DRAFT_1999 0.40 -0.1 2,003,234 + EX28DRAFT_1999 0.59 -0.7 2,003,340 + EX28DRAFT_1999 0.77 -0.3 2,003,340 + EX28DRAFT_1999 0.77 -0.1 2,003,340 + EX28DRAFT_1999 0.77 -0.1 2,003,341 - EX28DRAFT_1999 0.78 +0.3 2,003,341 - EX28DRAFT_1999 0.78 +0.4 2,003,467 + -0.2 2,003,468 - +1.6 2,003,509 + -2.2 2,003,509 + +0.7 2,003,762 + EX28DRAFT_2000 0.31 +0.6 2,003,762 + EX28DRAFT_2000 0.31 -1.8 2,003,763 - EX28DRAFT_2000 0.31 -0.5 2,003,763 - EX28DRAFT_2000 0.31 +0.6 2,003,763 - EX28DRAFT_2000 0.31 +0.1 2,003,827 + EX28DRAFT_2000 0.38 +0.5 2,003,827 + EX28DRAFT_2000 0.38 +0.5 2,003,828 - EX28DRAFT_2000 0.38 -3.3 2,003,845 + EX28DRAFT_2000 0.40 +0.0 2,004,116 + EX28DRAFT_2000 0.68 +0.6 2,004,140 - EX28DRAFT_2000 0.70 +0.4 2,004,157 + EX28DRAFT_2000 0.72 +0.5 2,004,157 + EX28DRAFT_2000 0.72 +0.2 2,004,257 + EX28DRAFT_2000 0.83 -0.8 2,004,258 - EX28DRAFT_2000 0.83 +0.2 2,004,258 - EX28DRAFT_2000 0.83 -0.1 2,004,286 + EX28DRAFT_2000 0.86 +0.9 2,004,287 - EX28DRAFT_2000 0.86 +1.0 2,004,341 + -0.3 2,004,374 - -0.5 2,004,416 - +0.9 2,004,416 - -0.9 2,004,446 + -0.1 2,004,469 + +0.7
Or see this region's nucleotide sequence