Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1988

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1986 and EX28DRAFT_1987 are separated by 63 nucleotidesEX28DRAFT_1987 and EX28DRAFT_1988 are separated by 186 nucleotidesEX28DRAFT_1988 and EX28DRAFT_1989 overlap by 40 nucleotidesEX28DRAFT_1989 and EX28DRAFT_1990 are separated by 71 nucleotides EX28DRAFT_1986: EX28DRAFT_1986 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 1,987,619 to 1,988,674 _1986 EX28DRAFT_1987: EX28DRAFT_1987 - Uncharacterized protein conserved in bacteria, at 1,988,738 to 1,989,190 _1987 EX28DRAFT_1988: EX28DRAFT_1988 - Predicted ATP-dependent protease, at 1,989,377 to 1,991,137 _1988 EX28DRAFT_1989: EX28DRAFT_1989 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60), at 1,991,098 to 1,991,724 _1989 EX28DRAFT_1990: EX28DRAFT_1990 - Ribosome modulation factor, at 1,991,796 to 1,991,963 _1990 Position (kb) 1989 1990 1991 1992Strain fitness (log2 ratio) -2 -1 0 1at 1988.656 kb on - strandat 1988.672 kb on + strandat 1988.672 kb on + strandat 1988.687 kb on + strandat 1988.687 kb on + strandat 1988.716 kb on - strandat 1988.796 kb on + strand, within EX28DRAFT_1987at 1988.797 kb on - strand, within EX28DRAFT_1987at 1988.806 kb on + strand, within EX28DRAFT_1987at 1988.807 kb on - strand, within EX28DRAFT_1987at 1988.807 kb on - strand, within EX28DRAFT_1987at 1988.991 kb on - strand, within EX28DRAFT_1987at 1989.142 kb on - strand, within EX28DRAFT_1987at 1989.205 kb on + strandat 1989.337 kb on + strandat 1989.340 kb on - strandat 1989.340 kb on - strandat 1989.352 kb on + strandat 1989.385 kb on + strandat 1989.582 kb on - strand, within EX28DRAFT_1988at 1989.656 kb on - strand, within EX28DRAFT_1988at 1989.781 kb on + strand, within EX28DRAFT_1988at 1989.782 kb on - strand, within EX28DRAFT_1988at 1989.813 kb on + strand, within EX28DRAFT_1988at 1989.814 kb on - strand, within EX28DRAFT_1988at 1989.967 kb on + strand, within EX28DRAFT_1988at 1990.061 kb on + strand, within EX28DRAFT_1988at 1990.061 kb on + strand, within EX28DRAFT_1988at 1990.062 kb on - strand, within EX28DRAFT_1988at 1990.062 kb on - strand, within EX28DRAFT_1988at 1990.071 kb on - strand, within EX28DRAFT_1988at 1990.192 kb on - strand, within EX28DRAFT_1988at 1990.204 kb on - strand, within EX28DRAFT_1988at 1990.696 kb on + strand, within EX28DRAFT_1988at 1990.858 kb on - strand, within EX28DRAFT_1988at 1991.058 kb on + strandat 1992.090 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,988,656 - -0.6
1,988,672 + -1.5
1,988,672 + -1.1
1,988,687 + -0.2
1,988,687 + -0.0
1,988,716 - +0.4
1,988,796 + EX28DRAFT_1987 0.13 +1.3
1,988,797 - EX28DRAFT_1987 0.13 +0.3
1,988,806 + EX28DRAFT_1987 0.15 +0.2
1,988,807 - EX28DRAFT_1987 0.15 +0.3
1,988,807 - EX28DRAFT_1987 0.15 -0.4
1,988,991 - EX28DRAFT_1987 0.56 +0.6
1,989,142 - EX28DRAFT_1987 0.89 -0.2
1,989,205 + -0.1
1,989,337 + -0.6
1,989,340 - +0.4
1,989,340 - -2.5
1,989,352 + -0.2
1,989,385 + -1.4
1,989,582 - EX28DRAFT_1988 0.12 -1.7
1,989,656 - EX28DRAFT_1988 0.16 -0.3
1,989,781 + EX28DRAFT_1988 0.23 -1.3
1,989,782 - EX28DRAFT_1988 0.23 -1.3
1,989,813 + EX28DRAFT_1988 0.25 -0.5
1,989,814 - EX28DRAFT_1988 0.25 -2.7
1,989,967 + EX28DRAFT_1988 0.34 -1.0
1,990,061 + EX28DRAFT_1988 0.39 -0.4
1,990,061 + EX28DRAFT_1988 0.39 -0.9
1,990,062 - EX28DRAFT_1988 0.39 -2.2
1,990,062 - EX28DRAFT_1988 0.39 -1.5
1,990,071 - EX28DRAFT_1988 0.39 -2.1
1,990,192 - EX28DRAFT_1988 0.46 +0.2
1,990,204 - EX28DRAFT_1988 0.47 -0.9
1,990,696 + EX28DRAFT_1988 0.75 -1.0
1,990,858 - EX28DRAFT_1988 0.84 -0.4
1,991,058 + -0.1
1,992,090 - +0.2

Or see this region's nucleotide sequence