Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1986 and EX28DRAFT_1987 are separated by 63 nucleotides EX28DRAFT_1987 and EX28DRAFT_1988 are separated by 186 nucleotides EX28DRAFT_1988 and EX28DRAFT_1989 overlap by 40 nucleotides EX28DRAFT_1989 and EX28DRAFT_1990 are separated by 71 nucleotides
EX28DRAFT_1986: EX28DRAFT_1986 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 1,987,619 to 1,988,674
_1986
EX28DRAFT_1987: EX28DRAFT_1987 - Uncharacterized protein conserved in bacteria, at 1,988,738 to 1,989,190
_1987
EX28DRAFT_1988: EX28DRAFT_1988 - Predicted ATP-dependent protease, at 1,989,377 to 1,991,137
_1988
EX28DRAFT_1989: EX28DRAFT_1989 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60), at 1,991,098 to 1,991,724
_1989
EX28DRAFT_1990: EX28DRAFT_1990 - Ribosome modulation factor, at 1,991,796 to 1,991,963
_1990
Position (kb)
1989
1990
1991
1992 Strain fitness (log2 ratio)
-2
-1
0
1 at 1988.656 kb on - strand at 1988.672 kb on + strand at 1988.672 kb on + strand at 1988.687 kb on + strand at 1988.687 kb on + strand at 1988.716 kb on - strand at 1988.796 kb on + strand, within EX28DRAFT_1987 at 1988.797 kb on - strand, within EX28DRAFT_1987 at 1988.806 kb on + strand, within EX28DRAFT_1987 at 1988.807 kb on - strand, within EX28DRAFT_1987 at 1988.807 kb on - strand, within EX28DRAFT_1987 at 1988.991 kb on - strand, within EX28DRAFT_1987 at 1989.142 kb on - strand, within EX28DRAFT_1987 at 1989.205 kb on + strand at 1989.337 kb on + strand at 1989.340 kb on - strand at 1989.340 kb on - strand at 1989.352 kb on + strand at 1989.385 kb on + strand at 1989.582 kb on - strand, within EX28DRAFT_1988 at 1989.656 kb on - strand, within EX28DRAFT_1988 at 1989.781 kb on + strand, within EX28DRAFT_1988 at 1989.782 kb on - strand, within EX28DRAFT_1988 at 1989.813 kb on + strand, within EX28DRAFT_1988 at 1989.814 kb on - strand, within EX28DRAFT_1988 at 1989.967 kb on + strand, within EX28DRAFT_1988 at 1990.061 kb on + strand, within EX28DRAFT_1988 at 1990.061 kb on + strand, within EX28DRAFT_1988 at 1990.062 kb on - strand, within EX28DRAFT_1988 at 1990.062 kb on - strand, within EX28DRAFT_1988 at 1990.071 kb on - strand, within EX28DRAFT_1988 at 1990.192 kb on - strand, within EX28DRAFT_1988 at 1990.204 kb on - strand, within EX28DRAFT_1988 at 1990.696 kb on + strand, within EX28DRAFT_1988 at 1990.858 kb on - strand, within EX28DRAFT_1988 at 1991.058 kb on + strand at 1992.090 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,988,656 - -0.6 1,988,672 + -1.5 1,988,672 + -1.1 1,988,687 + -0.2 1,988,687 + -0.0 1,988,716 - +0.4 1,988,796 + EX28DRAFT_1987 0.13 +1.3 1,988,797 - EX28DRAFT_1987 0.13 +0.3 1,988,806 + EX28DRAFT_1987 0.15 +0.2 1,988,807 - EX28DRAFT_1987 0.15 +0.3 1,988,807 - EX28DRAFT_1987 0.15 -0.4 1,988,991 - EX28DRAFT_1987 0.56 +0.6 1,989,142 - EX28DRAFT_1987 0.89 -0.2 1,989,205 + -0.1 1,989,337 + -0.6 1,989,340 - +0.4 1,989,340 - -2.5 1,989,352 + -0.2 1,989,385 + -1.4 1,989,582 - EX28DRAFT_1988 0.12 -1.7 1,989,656 - EX28DRAFT_1988 0.16 -0.3 1,989,781 + EX28DRAFT_1988 0.23 -1.3 1,989,782 - EX28DRAFT_1988 0.23 -1.3 1,989,813 + EX28DRAFT_1988 0.25 -0.5 1,989,814 - EX28DRAFT_1988 0.25 -2.7 1,989,967 + EX28DRAFT_1988 0.34 -1.0 1,990,061 + EX28DRAFT_1988 0.39 -0.4 1,990,061 + EX28DRAFT_1988 0.39 -0.9 1,990,062 - EX28DRAFT_1988 0.39 -2.2 1,990,062 - EX28DRAFT_1988 0.39 -1.5 1,990,071 - EX28DRAFT_1988 0.39 -2.1 1,990,192 - EX28DRAFT_1988 0.46 +0.2 1,990,204 - EX28DRAFT_1988 0.47 -0.9 1,990,696 + EX28DRAFT_1988 0.75 -1.0 1,990,858 - EX28DRAFT_1988 0.84 -0.4 1,991,058 + -0.1 1,992,090 - +0.2
Or see this region's nucleotide sequence