Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1983 and EX28DRAFT_1984 overlap by 44 nucleotides EX28DRAFT_1984 and EX28DRAFT_1985 are separated by 163 nucleotides EX28DRAFT_1985 and EX28DRAFT_1986 are separated by 354 nucleotides
EX28DRAFT_1983: EX28DRAFT_1983 - TIGR01666 family membrane protein, at 1,983,792 to 1,985,954
_1983
EX28DRAFT_1984: EX28DRAFT_1984 - regulator of competence-specific genes, at 1,985,911 to 1,986,537
_1984
EX28DRAFT_1985: EX28DRAFT_1985 - cell division inhibitor SulA, at 1,986,701 to 1,987,264
_1985
EX28DRAFT_1986: EX28DRAFT_1986 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 1,987,619 to 1,988,674
_1986
Position (kb) 1986
1987
1988 Strain fitness (log2 ratio) -2
-1
0
1 at 1985.857 kb on + strand at 1985.952 kb on + strand at 1986.180 kb on + strand, within EX28DRAFT_1984 at 1986.181 kb on - strand, within EX28DRAFT_1984 at 1986.296 kb on + strand, within EX28DRAFT_1984 at 1986.296 kb on + strand, within EX28DRAFT_1984 at 1986.296 kb on + strand, within EX28DRAFT_1984 at 1986.297 kb on - strand, within EX28DRAFT_1984 at 1986.297 kb on - strand, within EX28DRAFT_1984 at 1986.362 kb on + strand, within EX28DRAFT_1984 at 1986.392 kb on + strand, within EX28DRAFT_1984 at 1986.444 kb on + strand, within EX28DRAFT_1984 at 1986.447 kb on - strand, within EX28DRAFT_1984 at 1986.495 kb on - strand at 1986.522 kb on - strand at 1986.526 kb on + strand at 1986.615 kb on - strand at 1986.700 kb on + strand at 1986.701 kb on - strand at 1986.701 kb on - strand at 1986.701 kb on - strand at 1986.706 kb on + strand at 1986.771 kb on - strand, within EX28DRAFT_1985 at 1986.915 kb on + strand, within EX28DRAFT_1985 at 1986.916 kb on - strand, within EX28DRAFT_1985 at 1986.956 kb on - strand, within EX28DRAFT_1985 at 1987.074 kb on + strand, within EX28DRAFT_1985 at 1987.088 kb on + strand, within EX28DRAFT_1985 at 1987.088 kb on + strand, within EX28DRAFT_1985 at 1987.236 kb on + strand at 1987.314 kb on - strand at 1987.413 kb on - strand at 1987.529 kb on + strand at 1987.995 kb on + strand, within EX28DRAFT_1986
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,985,857 + -0.5 1,985,952 + +0.0 1,986,180 + EX28DRAFT_1984 0.43 -0.5 1,986,181 - EX28DRAFT_1984 0.43 -0.2 1,986,296 + EX28DRAFT_1984 0.61 -0.0 1,986,296 + EX28DRAFT_1984 0.61 -2.7 1,986,296 + EX28DRAFT_1984 0.61 +0.4 1,986,297 - EX28DRAFT_1984 0.62 -0.6 1,986,297 - EX28DRAFT_1984 0.62 -1.8 1,986,362 + EX28DRAFT_1984 0.72 +0.1 1,986,392 + EX28DRAFT_1984 0.77 -0.3 1,986,444 + EX28DRAFT_1984 0.85 +0.1 1,986,447 - EX28DRAFT_1984 0.85 +0.5 1,986,495 - +0.4 1,986,522 - +0.4 1,986,526 + -2.1 1,986,615 - -0.6 1,986,700 + -1.5 1,986,701 - -0.6 1,986,701 - +0.2 1,986,701 - -0.4 1,986,706 + -0.1 1,986,771 - EX28DRAFT_1985 0.12 +0.3 1,986,915 + EX28DRAFT_1985 0.38 -1.3 1,986,916 - EX28DRAFT_1985 0.38 -2.0 1,986,956 - EX28DRAFT_1985 0.45 -0.1 1,987,074 + EX28DRAFT_1985 0.66 +0.2 1,987,088 + EX28DRAFT_1985 0.69 -1.4 1,987,088 + EX28DRAFT_1985 0.69 -1.5 1,987,236 + +1.2 1,987,314 - -1.6 1,987,413 - +0.0 1,987,529 + -0.7 1,987,995 + EX28DRAFT_1986 0.36 -1.8
Or see this region's nucleotide sequence