Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1767

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1765 and EX28DRAFT_1766 are separated by 116 nucleotidesEX28DRAFT_1766 and EX28DRAFT_1767 are separated by 167 nucleotidesEX28DRAFT_1767 and EX28DRAFT_1768 are separated by 63 nucleotides EX28DRAFT_1765: EX28DRAFT_1765 - selenophosphate synthase (EC 2.7.9.3), at 1,780,365 to 1,781,408 _1765 EX28DRAFT_1766: EX28DRAFT_1766 - Nitroreductase, at 1,781,525 to 1,782,076 _1766 EX28DRAFT_1767: EX28DRAFT_1767 - signal peptide peptidase SppA, 67K type, at 1,782,244 to 1,784,100 _1767 EX28DRAFT_1768: EX28DRAFT_1768 - L-asparaginase, type I, at 1,784,164 to 1,785,180 _1768 Position (kb) 1782 1783 1784 1785Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1781.377 kb on + strandat 1781.441 kb on + strandat 1781.463 kb on + strandat 1781.464 kb on - strandat 1781.464 kb on - strandat 1781.467 kb on + strandat 1781.468 kb on - strandat 1781.468 kb on - strandat 1781.468 kb on - strandat 1781.468 kb on - strandat 1781.582 kb on - strand, within EX28DRAFT_1766at 1781.620 kb on + strand, within EX28DRAFT_1766at 1781.930 kb on - strand, within EX28DRAFT_1766at 1782.180 kb on - strandat 1782.196 kb on - strandat 1782.241 kb on + strandat 1782.241 kb on + strandat 1782.241 kb on + strandat 1782.242 kb on - strandat 1782.279 kb on + strandat 1782.376 kb on - strandat 1782.722 kb on - strand, within EX28DRAFT_1767at 1782.805 kb on + strand, within EX28DRAFT_1767at 1782.805 kb on + strand, within EX28DRAFT_1767at 1782.808 kb on + strand, within EX28DRAFT_1767at 1782.866 kb on - strand, within EX28DRAFT_1767at 1782.867 kb on + strand, within EX28DRAFT_1767at 1782.867 kb on + strand, within EX28DRAFT_1767at 1782.868 kb on - strand, within EX28DRAFT_1767at 1782.900 kb on + strand, within EX28DRAFT_1767at 1782.958 kb on + strand, within EX28DRAFT_1767at 1782.990 kb on + strand, within EX28DRAFT_1767at 1783.042 kb on - strand, within EX28DRAFT_1767at 1783.158 kb on + strand, within EX28DRAFT_1767at 1783.183 kb on + strand, within EX28DRAFT_1767at 1783.183 kb on + strand, within EX28DRAFT_1767at 1783.183 kb on + strand, within EX28DRAFT_1767at 1783.183 kb on + strand, within EX28DRAFT_1767at 1783.184 kb on - strand, within EX28DRAFT_1767at 1783.184 kb on - strand, within EX28DRAFT_1767at 1783.189 kb on + strand, within EX28DRAFT_1767at 1783.501 kb on + strand, within EX28DRAFT_1767at 1783.501 kb on + strand, within EX28DRAFT_1767at 1783.502 kb on - strand, within EX28DRAFT_1767at 1783.696 kb on + strand, within EX28DRAFT_1767at 1783.697 kb on - strand, within EX28DRAFT_1767at 1783.698 kb on + strand, within EX28DRAFT_1767at 1783.708 kb on - strand, within EX28DRAFT_1767at 1783.888 kb on + strand, within EX28DRAFT_1767at 1783.891 kb on + strand, within EX28DRAFT_1767at 1783.979 kb on - strandat 1783.979 kb on - strandat 1784.186 kb on + strandat 1784.233 kb on + strandat 1784.233 kb on + strandat 1784.234 kb on - strandat 1784.235 kb on + strandat 1784.389 kb on - strand, within EX28DRAFT_1768at 1784.573 kb on - strand, within EX28DRAFT_1768at 1784.811 kb on + strand, within EX28DRAFT_1768at 1784.811 kb on + strand, within EX28DRAFT_1768at 1784.811 kb on + strand, within EX28DRAFT_1768at 1784.811 kb on + strand, within EX28DRAFT_1768at 1784.811 kb on + strand, within EX28DRAFT_1768at 1784.815 kb on + strand, within EX28DRAFT_1768at 1784.845 kb on - strand, within EX28DRAFT_1768at 1784.898 kb on + strand, within EX28DRAFT_1768at 1784.898 kb on + strand, within EX28DRAFT_1768at 1784.982 kb on + strand, within EX28DRAFT_1768at 1784.983 kb on - strand, within EX28DRAFT_1768at 1784.983 kb on - strand, within EX28DRAFT_1768at 1784.983 kb on - strand, within EX28DRAFT_1768

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,781,377 + +0.2
1,781,441 + -2.6
1,781,463 + -1.0
1,781,464 - +0.3
1,781,464 - +1.2
1,781,467 + +1.0
1,781,468 - -0.6
1,781,468 - +0.5
1,781,468 - +0.4
1,781,468 - -0.6
1,781,582 - EX28DRAFT_1766 0.10 -0.3
1,781,620 + EX28DRAFT_1766 0.17 -0.1
1,781,930 - EX28DRAFT_1766 0.73 +0.0
1,782,180 - +0.4
1,782,196 - +0.4
1,782,241 + +0.3
1,782,241 + +0.9
1,782,241 + +0.0
1,782,242 - +1.1
1,782,279 + -0.8
1,782,376 - -0.2
1,782,722 - EX28DRAFT_1767 0.26 +0.2
1,782,805 + EX28DRAFT_1767 0.30 -0.2
1,782,805 + EX28DRAFT_1767 0.30 +0.1
1,782,808 + EX28DRAFT_1767 0.30 +0.7
1,782,866 - EX28DRAFT_1767 0.33 -0.9
1,782,867 + EX28DRAFT_1767 0.34 +0.7
1,782,867 + EX28DRAFT_1767 0.34 -0.1
1,782,868 - EX28DRAFT_1767 0.34 +0.3
1,782,900 + EX28DRAFT_1767 0.35 +0.1
1,782,958 + EX28DRAFT_1767 0.38 -0.2
1,782,990 + EX28DRAFT_1767 0.40 +0.7
1,783,042 - EX28DRAFT_1767 0.43 +0.6
1,783,158 + EX28DRAFT_1767 0.49 +0.1
1,783,183 + EX28DRAFT_1767 0.51 +0.7
1,783,183 + EX28DRAFT_1767 0.51 -1.7
1,783,183 + EX28DRAFT_1767 0.51 -0.1
1,783,183 + EX28DRAFT_1767 0.51 -0.1
1,783,184 - EX28DRAFT_1767 0.51 +0.9
1,783,184 - EX28DRAFT_1767 0.51 -0.8
1,783,189 + EX28DRAFT_1767 0.51 -1.1
1,783,501 + EX28DRAFT_1767 0.68 +0.2
1,783,501 + EX28DRAFT_1767 0.68 -0.3
1,783,502 - EX28DRAFT_1767 0.68 +0.8
1,783,696 + EX28DRAFT_1767 0.78 +1.0
1,783,697 - EX28DRAFT_1767 0.78 -0.8
1,783,698 + EX28DRAFT_1767 0.78 +1.5
1,783,708 - EX28DRAFT_1767 0.79 -0.0
1,783,888 + EX28DRAFT_1767 0.89 +0.1
1,783,891 + EX28DRAFT_1767 0.89 -0.4
1,783,979 - +0.4
1,783,979 - -0.6
1,784,186 + +0.8
1,784,233 + -0.2
1,784,233 + -0.4
1,784,234 - +0.0
1,784,235 + +0.1
1,784,389 - EX28DRAFT_1768 0.22 -0.1
1,784,573 - EX28DRAFT_1768 0.40 +0.6
1,784,811 + EX28DRAFT_1768 0.64 +0.7
1,784,811 + EX28DRAFT_1768 0.64 +0.8
1,784,811 + EX28DRAFT_1768 0.64 -0.7
1,784,811 + EX28DRAFT_1768 0.64 +0.6
1,784,811 + EX28DRAFT_1768 0.64 -0.4
1,784,815 + EX28DRAFT_1768 0.64 -0.1
1,784,845 - EX28DRAFT_1768 0.67 -1.3
1,784,898 + EX28DRAFT_1768 0.72 +0.5
1,784,898 + EX28DRAFT_1768 0.72 -0.6
1,784,982 + EX28DRAFT_1768 0.80 +0.7
1,784,983 - EX28DRAFT_1768 0.81 +3.4
1,784,983 - EX28DRAFT_1768 0.81 +0.8
1,784,983 - EX28DRAFT_1768 0.81 +1.0

Or see this region's nucleotide sequence