Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1666 and EX28DRAFT_1667 are separated by 125 nucleotides EX28DRAFT_1667 and EX28DRAFT_1668 are separated by 92 nucleotides EX28DRAFT_1668 and EX28DRAFT_1669 are separated by 239 nucleotides EX28DRAFT_1669 and EX28DRAFT_1670 are separated by 2 nucleotides EX28DRAFT_1670 and EX28DRAFT_1671 overlap by 1 nucleotides
EX28DRAFT_1666: EX28DRAFT_1666 - hypothetical protein, at 1,680,874 to 1,681,656
_1666
EX28DRAFT_1667: EX28DRAFT_1667 - hypothetical protein, at 1,681,782 to 1,681,922
_1667
EX28DRAFT_1668: EX28DRAFT_1668 - hypothetical protein, at 1,682,015 to 1,682,182
_1668
EX28DRAFT_1669: EX28DRAFT_1669 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 1,682,422 to 1,683,258
_1669
EX28DRAFT_1670: EX28DRAFT_1670 - ABC-type polar amino acid transport system, ATPase component, at 1,683,261 to 1,684,076
_1670
EX28DRAFT_1671: EX28DRAFT_1671 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 1,684,076 to 1,684,852
_1671
Position (kb)
1682
1683
1684 Strain fitness (log2 ratio)
-2
-1
0
1 at 1681.518 kb on + strand, within EX28DRAFT_1666 at 1681.575 kb on - strand, within EX28DRAFT_1666 at 1681.622 kb on + strand at 1681.623 kb on - strand at 1681.641 kb on + strand at 1681.651 kb on - strand at 1681.685 kb on + strand at 1681.686 kb on - strand at 1681.686 kb on - strand at 1681.703 kb on + strand at 1681.704 kb on - strand at 1681.704 kb on - strand at 1681.740 kb on + strand at 1681.740 kb on + strand at 1681.740 kb on + strand at 1681.741 kb on - strand at 1681.742 kb on + strand at 1681.742 kb on + strand at 1681.743 kb on - strand at 1681.804 kb on + strand, within EX28DRAFT_1667 at 1681.804 kb on + strand, within EX28DRAFT_1667 at 1681.838 kb on + strand, within EX28DRAFT_1667 at 1681.839 kb on - strand, within EX28DRAFT_1667 at 1681.920 kb on + strand at 1681.923 kb on + strand at 1681.924 kb on - strand at 1681.953 kb on + strand at 1682.029 kb on + strand at 1682.217 kb on + strand at 1682.217 kb on + strand at 1682.217 kb on + strand at 1682.281 kb on + strand at 1682.282 kb on - strand at 1682.398 kb on - strand at 1682.428 kb on - strand at 1682.532 kb on + strand, within EX28DRAFT_1669 at 1682.536 kb on - strand, within EX28DRAFT_1669 at 1682.592 kb on + strand, within EX28DRAFT_1669 at 1682.751 kb on + strand, within EX28DRAFT_1669 at 1682.752 kb on - strand, within EX28DRAFT_1669 at 1682.754 kb on + strand, within EX28DRAFT_1669 at 1682.754 kb on + strand, within EX28DRAFT_1669 at 1682.754 kb on + strand, within EX28DRAFT_1669 at 1682.755 kb on - strand, within EX28DRAFT_1669 at 1682.832 kb on + strand, within EX28DRAFT_1669 at 1682.944 kb on + strand, within EX28DRAFT_1669 at 1682.944 kb on + strand, within EX28DRAFT_1669 at 1682.953 kb on - strand, within EX28DRAFT_1669 at 1683.060 kb on + strand, within EX28DRAFT_1669 at 1683.240 kb on + strand at 1683.241 kb on - strand at 1683.245 kb on + strand at 1683.256 kb on + strand at 1683.257 kb on - strand at 1683.257 kb on - strand at 1683.257 kb on - strand at 1683.818 kb on + strand, within EX28DRAFT_1670 at 1683.858 kb on + strand, within EX28DRAFT_1670 at 1683.858 kb on + strand, within EX28DRAFT_1670 at 1683.954 kb on - strand, within EX28DRAFT_1670 at 1684.074 kb on + strand at 1684.074 kb on + strand at 1684.128 kb on + strand at 1684.128 kb on + strand at 1684.204 kb on + strand, within EX28DRAFT_1671 at 1684.204 kb on + strand, within EX28DRAFT_1671 at 1684.205 kb on - strand, within EX28DRAFT_1671 at 1684.205 kb on - strand, within EX28DRAFT_1671
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,681,518 + EX28DRAFT_1666 0.82 +0.8 1,681,575 - EX28DRAFT_1666 0.90 +0.5 1,681,622 + -0.0 1,681,623 - -0.7 1,681,641 + +0.2 1,681,651 - +0.7 1,681,685 + -0.8 1,681,686 - +0.0 1,681,686 - -1.8 1,681,703 + -0.2 1,681,704 - +0.3 1,681,704 - -0.3 1,681,740 + +0.1 1,681,740 + +0.2 1,681,740 + +0.3 1,681,741 - -2.3 1,681,742 + +0.5 1,681,742 + +0.3 1,681,743 - -1.4 1,681,804 + EX28DRAFT_1667 0.16 +0.4 1,681,804 + EX28DRAFT_1667 0.16 +0.3 1,681,838 + EX28DRAFT_1667 0.40 +0.1 1,681,839 - EX28DRAFT_1667 0.40 -0.2 1,681,920 + -1.0 1,681,923 + -0.2 1,681,924 - -0.5 1,681,953 + -1.9 1,682,029 + -1.1 1,682,217 + -0.1 1,682,217 + -0.6 1,682,217 + -0.1 1,682,281 + -1.2 1,682,282 - +0.4 1,682,398 - -0.0 1,682,428 - -0.1 1,682,532 + EX28DRAFT_1669 0.13 -0.1 1,682,536 - EX28DRAFT_1669 0.14 -0.5 1,682,592 + EX28DRAFT_1669 0.20 +0.1 1,682,751 + EX28DRAFT_1669 0.39 -1.0 1,682,752 - EX28DRAFT_1669 0.39 -1.1 1,682,754 + EX28DRAFT_1669 0.40 -0.5 1,682,754 + EX28DRAFT_1669 0.40 +0.9 1,682,754 + EX28DRAFT_1669 0.40 -0.3 1,682,755 - EX28DRAFT_1669 0.40 -0.3 1,682,832 + EX28DRAFT_1669 0.49 -1.4 1,682,944 + EX28DRAFT_1669 0.62 +0.8 1,682,944 + EX28DRAFT_1669 0.62 +0.1 1,682,953 - EX28DRAFT_1669 0.63 -1.2 1,683,060 + EX28DRAFT_1669 0.76 +0.7 1,683,240 + -0.9 1,683,241 - -0.5 1,683,245 + -0.1 1,683,256 + +0.2 1,683,257 - +0.4 1,683,257 - -0.7 1,683,257 - +0.4 1,683,818 + EX28DRAFT_1670 0.68 -1.4 1,683,858 + EX28DRAFT_1670 0.73 -1.8 1,683,858 + EX28DRAFT_1670 0.73 +0.7 1,683,954 - EX28DRAFT_1670 0.85 +0.1 1,684,074 + +0.1 1,684,074 + +0.2 1,684,128 + +0.1 1,684,128 + -1.8 1,684,204 + EX28DRAFT_1671 0.16 +0.3 1,684,204 + EX28DRAFT_1671 0.16 +0.9 1,684,205 - EX28DRAFT_1671 0.17 -0.1 1,684,205 - EX28DRAFT_1671 0.17 +0.3
Or see this region's nucleotide sequence