Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1649

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1648 and EX28DRAFT_1649 are separated by 100 nucleotidesEX28DRAFT_1649 and EX28DRAFT_1650 are separated by 95 nucleotidesEX28DRAFT_1650 and EX28DRAFT_1651 are separated by 44 nucleotides EX28DRAFT_1648: EX28DRAFT_1648 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 1,664,809 to 1,665,906 _1648 EX28DRAFT_1649: EX28DRAFT_1649 - lactoylglutathione lyase, at 1,666,007 to 1,666,414 _1649 EX28DRAFT_1650: EX28DRAFT_1650 - ribonuclease T, at 1,666,510 to 1,667,160 _1650 EX28DRAFT_1651: EX28DRAFT_1651 - monothiol glutaredoxin, Grx4 family, at 1,667,205 to 1,667,552 _1651 Position (kb) 1666 1667Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1665.195 kb on + strand, within EX28DRAFT_1648at 1665.198 kb on - strand, within EX28DRAFT_1648at 1665.399 kb on + strand, within EX28DRAFT_1648at 1665.474 kb on - strand, within EX28DRAFT_1648at 1665.574 kb on + strand, within EX28DRAFT_1648at 1665.718 kb on + strand, within EX28DRAFT_1648at 1665.719 kb on - strand, within EX28DRAFT_1648at 1665.721 kb on - strand, within EX28DRAFT_1648at 1665.759 kb on - strand, within EX28DRAFT_1648at 1665.883 kb on + strandat 1665.893 kb on - strandat 1665.982 kb on + strandat 1665.983 kb on - strandat 1665.983 kb on - strandat 1666.006 kb on + strandat 1666.007 kb on - strandat 1666.069 kb on + strand, within EX28DRAFT_1649at 1666.121 kb on + strand, within EX28DRAFT_1649at 1666.122 kb on - strand, within EX28DRAFT_1649at 1666.122 kb on - strand, within EX28DRAFT_1649at 1666.181 kb on + strand, within EX28DRAFT_1649at 1666.182 kb on - strand, within EX28DRAFT_1649at 1666.182 kb on - strand, within EX28DRAFT_1649at 1666.183 kb on + strand, within EX28DRAFT_1649at 1666.184 kb on - strand, within EX28DRAFT_1649at 1666.202 kb on + strand, within EX28DRAFT_1649at 1666.202 kb on + strand, within EX28DRAFT_1649at 1666.203 kb on - strand, within EX28DRAFT_1649at 1666.315 kb on - strand, within EX28DRAFT_1649at 1666.440 kb on + strandat 1666.498 kb on + strandat 1666.786 kb on + strand, within EX28DRAFT_1650at 1667.004 kb on + strand, within EX28DRAFT_1650at 1667.191 kb on - strandat 1667.206 kb on + strandat 1667.282 kb on - strand, within EX28DRAFT_1651at 1667.360 kb on - strand, within EX28DRAFT_1651at 1667.360 kb on - strand, within EX28DRAFT_1651at 1667.400 kb on - strand, within EX28DRAFT_1651

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
1,665,195 + EX28DRAFT_1648 0.35 -1.2
1,665,198 - EX28DRAFT_1648 0.35 +0.1
1,665,399 + EX28DRAFT_1648 0.54 +0.5
1,665,474 - EX28DRAFT_1648 0.61 +0.5
1,665,574 + EX28DRAFT_1648 0.70 -1.1
1,665,718 + EX28DRAFT_1648 0.83 -0.9
1,665,719 - EX28DRAFT_1648 0.83 -0.8
1,665,721 - EX28DRAFT_1648 0.83 +0.4
1,665,759 - EX28DRAFT_1648 0.87 +0.4
1,665,883 + +0.4
1,665,893 - -0.2
1,665,982 + -0.2
1,665,983 - -0.5
1,665,983 - -2.2
1,666,006 + -0.3
1,666,007 - -0.4
1,666,069 + EX28DRAFT_1649 0.15 -0.8
1,666,121 + EX28DRAFT_1649 0.28 -1.1
1,666,122 - EX28DRAFT_1649 0.28 -1.3
1,666,122 - EX28DRAFT_1649 0.28 -1.8
1,666,181 + EX28DRAFT_1649 0.43 -1.3
1,666,182 - EX28DRAFT_1649 0.43 -1.6
1,666,182 - EX28DRAFT_1649 0.43 -3.8
1,666,183 + EX28DRAFT_1649 0.43 -2.4
1,666,184 - EX28DRAFT_1649 0.43 -0.3
1,666,202 + EX28DRAFT_1649 0.48 -0.4
1,666,202 + EX28DRAFT_1649 0.48 -1.2
1,666,203 - EX28DRAFT_1649 0.48 -1.8
1,666,315 - EX28DRAFT_1649 0.75 -2.6
1,666,440 + +1.2
1,666,498 + +1.1
1,666,786 + EX28DRAFT_1650 0.42 -2.2
1,667,004 + EX28DRAFT_1650 0.76 -1.2
1,667,191 - +1.5
1,667,206 + -0.1
1,667,282 - EX28DRAFT_1651 0.22 +0.1
1,667,360 - EX28DRAFT_1651 0.45 +0.5
1,667,360 - EX28DRAFT_1651 0.45 +0.4
1,667,400 - EX28DRAFT_1651 0.56 -0.7

Or see this region's nucleotide sequence