Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1623 and EX28DRAFT_1624 overlap by 1 nucleotides EX28DRAFT_1624 and EX28DRAFT_1625 overlap by 8 nucleotides EX28DRAFT_1625 and EX28DRAFT_1626 are separated by 0 nucleotides
EX28DRAFT_1623: EX28DRAFT_1623 - electron transport complex, RnfABCDGE type, A subunit, at 1,640,757 to 1,641,338
_1623
EX28DRAFT_1624: EX28DRAFT_1624 - electron transport complex, RnfABCDGE type, B subunit, at 1,641,338 to 1,641,916
_1624
EX28DRAFT_1625: EX28DRAFT_1625 - electron transport complex, RnfABCDGE type, C subunit, at 1,641,909 to 1,644,044
_1625
EX28DRAFT_1626: EX28DRAFT_1626 - electron transport complex, RnfABCDGE type, D subunit, at 1,644,045 to 1,645,097
_1626
Position (kb)
1641
1642
1643
1644
1645 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1640.967 kb on + strand, within EX28DRAFT_1623 at 1640.988 kb on - strand, within EX28DRAFT_1623 at 1641.018 kb on - strand, within EX28DRAFT_1623 at 1641.197 kb on + strand, within EX28DRAFT_1623 at 1641.198 kb on - strand, within EX28DRAFT_1623 at 1641.318 kb on - strand at 1641.820 kb on + strand, within EX28DRAFT_1624 at 1641.820 kb on + strand, within EX28DRAFT_1624 at 1641.914 kb on + strand at 1641.914 kb on + strand at 1641.914 kb on + strand at 1641.914 kb on + strand at 1641.915 kb on - strand at 1641.915 kb on - strand at 1641.915 kb on - strand at 1641.915 kb on - strand at 1642.442 kb on + strand, within EX28DRAFT_1625 at 1642.556 kb on + strand, within EX28DRAFT_1625 at 1642.556 kb on + strand, within EX28DRAFT_1625 at 1642.579 kb on + strand, within EX28DRAFT_1625 at 1643.238 kb on + strand, within EX28DRAFT_1625 at 1643.239 kb on - strand, within EX28DRAFT_1625 at 1643.239 kb on - strand, within EX28DRAFT_1625 at 1643.842 kb on + strand at 1644.042 kb on + strand at 1644.042 kb on + strand at 1644.042 kb on + strand at 1644.104 kb on + strand at 1644.104 kb on + strand at 1644.105 kb on - strand at 1644.887 kb on - strand, within EX28DRAFT_1626 at 1644.887 kb on - strand, within EX28DRAFT_1626
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,640,967 + EX28DRAFT_1623 0.36 -2.1 1,640,988 - EX28DRAFT_1623 0.40 -0.8 1,641,018 - EX28DRAFT_1623 0.45 -0.5 1,641,197 + EX28DRAFT_1623 0.76 -0.3 1,641,198 - EX28DRAFT_1623 0.76 -2.3 1,641,318 - -4.3 1,641,820 + EX28DRAFT_1624 0.83 -0.3 1,641,820 + EX28DRAFT_1624 0.83 -0.4 1,641,914 + -0.9 1,641,914 + -0.5 1,641,914 + -1.1 1,641,914 + +0.7 1,641,915 - -4.1 1,641,915 - -3.8 1,641,915 - -1.4 1,641,915 - -1.0 1,642,442 + EX28DRAFT_1625 0.25 +0.4 1,642,556 + EX28DRAFT_1625 0.30 -0.3 1,642,556 + EX28DRAFT_1625 0.30 -4.6 1,642,579 + EX28DRAFT_1625 0.31 -1.4 1,643,238 + EX28DRAFT_1625 0.62 -1.4 1,643,239 - EX28DRAFT_1625 0.62 -0.3 1,643,239 - EX28DRAFT_1625 0.62 -2.3 1,643,842 + +0.4 1,644,042 + -0.6 1,644,042 + -1.0 1,644,042 + -0.0 1,644,104 + -0.1 1,644,104 + +0.2 1,644,105 - -0.7 1,644,887 - EX28DRAFT_1626 0.80 -1.0 1,644,887 - EX28DRAFT_1626 0.80 -1.9
Or see this region's nucleotide sequence