Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1584

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1582 and EX28DRAFT_1583 overlap by 4 nucleotidesEX28DRAFT_1583 and EX28DRAFT_1584 overlap by 4 nucleotidesEX28DRAFT_1584 and EX28DRAFT_1585 overlap by 35 nucleotidesEX28DRAFT_1585 and EX28DRAFT_1586 are separated by 39 nucleotidesEX28DRAFT_1586 and EX28DRAFT_1587 are separated by 107 nucleotides EX28DRAFT_1582: EX28DRAFT_1582 - Antitermination protein, at 1,595,756 to 1,596,589 _1582 EX28DRAFT_1583: EX28DRAFT_1583 - Holliday junction resolvase, at 1,596,586 to 1,596,954 _1583 EX28DRAFT_1584: EX28DRAFT_1584 - hypothetical protein, at 1,596,951 to 1,597,190 _1584 EX28DRAFT_1585: EX28DRAFT_1585 - Protein of unknown function (DUF1367), at 1,597,156 to 1,597,758 _1585 EX28DRAFT_1586: EX28DRAFT_1586 - hypothetical protein, at 1,597,798 to 1,598,040 _1586 EX28DRAFT_1587: EX28DRAFT_1587 - DinI-like family, at 1,598,148 to 1,598,372 _1587 Position (kb) 1596 1597 1598Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1595.984 kb on - strand, within EX28DRAFT_1582at 1596.038 kb on + strand, within EX28DRAFT_1582at 1596.038 kb on + strand, within EX28DRAFT_1582at 1596.039 kb on - strand, within EX28DRAFT_1582at 1596.041 kb on + strand, within EX28DRAFT_1582at 1596.042 kb on - strand, within EX28DRAFT_1582at 1596.042 kb on - strand, within EX28DRAFT_1582at 1596.098 kb on - strand, within EX28DRAFT_1582at 1596.098 kb on - strand, within EX28DRAFT_1582at 1596.098 kb on - strand, within EX28DRAFT_1582at 1596.109 kb on - strand, within EX28DRAFT_1582at 1596.317 kb on - strand, within EX28DRAFT_1582at 1596.373 kb on - strand, within EX28DRAFT_1582at 1596.444 kb on + strand, within EX28DRAFT_1582at 1596.445 kb on - strand, within EX28DRAFT_1582at 1596.504 kb on - strand, within EX28DRAFT_1582at 1596.668 kb on - strand, within EX28DRAFT_1583at 1596.790 kb on + strand, within EX28DRAFT_1583at 1596.790 kb on + strand, within EX28DRAFT_1583at 1596.790 kb on + strand, within EX28DRAFT_1583at 1596.867 kb on + strand, within EX28DRAFT_1583at 1596.998 kb on + strand, within EX28DRAFT_1584at 1596.999 kb on - strand, within EX28DRAFT_1584at 1597.085 kb on - strand, within EX28DRAFT_1584at 1597.262 kb on + strand, within EX28DRAFT_1585at 1597.262 kb on + strand, within EX28DRAFT_1585at 1597.263 kb on - strand, within EX28DRAFT_1585at 1597.388 kb on + strand, within EX28DRAFT_1585at 1597.413 kb on + strand, within EX28DRAFT_1585at 1597.450 kb on + strand, within EX28DRAFT_1585at 1597.455 kb on - strand, within EX28DRAFT_1585at 1597.455 kb on - strand, within EX28DRAFT_1585at 1597.497 kb on - strand, within EX28DRAFT_1585at 1597.552 kb on - strand, within EX28DRAFT_1585at 1597.717 kb on + strandat 1597.737 kb on + strandat 1597.737 kb on + strandat 1597.744 kb on + strandat 1597.783 kb on - strandat 1597.783 kb on - strandat 1597.784 kb on + strandat 1597.785 kb on - strandat 1597.810 kb on - strandat 1597.813 kb on - strandat 1597.813 kb on - strandat 1597.813 kb on - strandat 1597.827 kb on + strand, within EX28DRAFT_1586at 1597.915 kb on + strand, within EX28DRAFT_1586at 1597.915 kb on + strand, within EX28DRAFT_1586at 1597.964 kb on + strand, within EX28DRAFT_1586at 1597.964 kb on + strand, within EX28DRAFT_1586at 1597.964 kb on + strand, within EX28DRAFT_1586at 1597.965 kb on - strand, within EX28DRAFT_1586at 1597.965 kb on - strand, within EX28DRAFT_1586at 1598.019 kb on + strandat 1598.042 kb on - strandat 1598.042 kb on - strandat 1598.042 kb on - strandat 1598.061 kb on + strandat 1598.062 kb on - strandat 1598.153 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,595,984 - EX28DRAFT_1582 0.27 -1.1
1,596,038 + EX28DRAFT_1582 0.34 -0.4
1,596,038 + EX28DRAFT_1582 0.34 +0.6
1,596,039 - EX28DRAFT_1582 0.34 +0.6
1,596,041 + EX28DRAFT_1582 0.34 -2.7
1,596,042 - EX28DRAFT_1582 0.34 +1.9
1,596,042 - EX28DRAFT_1582 0.34 -0.6
1,596,098 - EX28DRAFT_1582 0.41 +0.4
1,596,098 - EX28DRAFT_1582 0.41 -1.0
1,596,098 - EX28DRAFT_1582 0.41 -0.4
1,596,109 - EX28DRAFT_1582 0.42 +0.5
1,596,317 - EX28DRAFT_1582 0.67 -0.5
1,596,373 - EX28DRAFT_1582 0.74 -0.4
1,596,444 + EX28DRAFT_1582 0.82 -0.4
1,596,445 - EX28DRAFT_1582 0.83 +0.2
1,596,504 - EX28DRAFT_1582 0.90 +0.1
1,596,668 - EX28DRAFT_1583 0.22 +0.6
1,596,790 + EX28DRAFT_1583 0.55 +0.3
1,596,790 + EX28DRAFT_1583 0.55 +0.2
1,596,790 + EX28DRAFT_1583 0.55 +0.1
1,596,867 + EX28DRAFT_1583 0.76 +0.2
1,596,998 + EX28DRAFT_1584 0.20 -1.5
1,596,999 - EX28DRAFT_1584 0.20 -1.2
1,597,085 - EX28DRAFT_1584 0.56 -0.2
1,597,262 + EX28DRAFT_1585 0.18 -1.1
1,597,262 + EX28DRAFT_1585 0.18 +0.1
1,597,263 - EX28DRAFT_1585 0.18 +1.0
1,597,388 + EX28DRAFT_1585 0.38 -0.1
1,597,413 + EX28DRAFT_1585 0.43 +0.6
1,597,450 + EX28DRAFT_1585 0.49 -0.3
1,597,455 - EX28DRAFT_1585 0.50 -1.3
1,597,455 - EX28DRAFT_1585 0.50 +0.1
1,597,497 - EX28DRAFT_1585 0.57 -3.6
1,597,552 - EX28DRAFT_1585 0.66 +0.5
1,597,717 + -0.3
1,597,737 + +0.4
1,597,737 + -0.3
1,597,744 + -0.0
1,597,783 - -0.3
1,597,783 - +0.3
1,597,784 + -2.5
1,597,785 - +0.2
1,597,810 - -0.7
1,597,813 - +0.1
1,597,813 - +0.0
1,597,813 - -1.3
1,597,827 + EX28DRAFT_1586 0.12 -0.9
1,597,915 + EX28DRAFT_1586 0.48 +0.7
1,597,915 + EX28DRAFT_1586 0.48 -1.2
1,597,964 + EX28DRAFT_1586 0.68 +0.3
1,597,964 + EX28DRAFT_1586 0.68 +0.8
1,597,964 + EX28DRAFT_1586 0.68 -0.8
1,597,965 - EX28DRAFT_1586 0.69 +0.1
1,597,965 - EX28DRAFT_1586 0.69 -2.6
1,598,019 + +0.4
1,598,042 - +0.5
1,598,042 - -0.9
1,598,042 - +0.7
1,598,061 + +0.9
1,598,062 - +0.1
1,598,153 + -0.3

Or see this region's nucleotide sequence