Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1579 and EX28DRAFT_1580 overlap by 4 nucleotides EX28DRAFT_1580 and EX28DRAFT_1581 overlap by 23 nucleotides EX28DRAFT_1581 and EX28DRAFT_1582 are separated by 717 nucleotides
EX28DRAFT_1579: EX28DRAFT_1579 - Bacteriophage Rz lysis protein, at 1,593,884 to 1,594,345
_1579
EX28DRAFT_1580: EX28DRAFT_1580 - Phage-related lysozyme (muraminidase), at 1,594,342 to 1,594,836
_1580
EX28DRAFT_1581: EX28DRAFT_1581 - Lysis protein S, at 1,594,814 to 1,595,038
_1581
EX28DRAFT_1582: EX28DRAFT_1582 - Antitermination protein, at 1,595,756 to 1,596,589
_1582
Position (kb)
1594
1595 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1593.406 kb on + strand at 1593.422 kb on + strand at 1593.422 kb on + strand at 1593.423 kb on - strand at 1593.423 kb on - strand at 1593.462 kb on - strand at 1593.462 kb on - strand at 1593.479 kb on + strand at 1593.480 kb on - strand at 1593.573 kb on - strand at 1593.584 kb on + strand at 1593.584 kb on + strand at 1593.584 kb on + strand at 1593.584 kb on + strand at 1593.588 kb on + strand at 1593.589 kb on - strand at 1593.606 kb on + strand at 1593.606 kb on + strand at 1593.606 kb on + strand at 1593.657 kb on + strand at 1593.766 kb on + strand at 1593.766 kb on + strand at 1593.826 kb on + strand at 1593.826 kb on + strand at 1593.886 kb on - strand at 1593.893 kb on - strand at 1593.909 kb on + strand at 1593.909 kb on + strand at 1593.910 kb on - strand at 1593.910 kb on - strand at 1593.910 kb on - strand at 1593.922 kb on - strand at 1594.078 kb on + strand, within EX28DRAFT_1579 at 1594.130 kb on + strand, within EX28DRAFT_1579 at 1594.147 kb on + strand, within EX28DRAFT_1579 at 1594.148 kb on - strand, within EX28DRAFT_1579 at 1594.249 kb on - strand, within EX28DRAFT_1579 at 1594.249 kb on - strand, within EX28DRAFT_1579 at 1594.309 kb on + strand at 1594.313 kb on + strand at 1594.313 kb on + strand at 1594.313 kb on + strand at 1594.313 kb on + strand at 1594.314 kb on - strand at 1594.314 kb on - strand at 1594.314 kb on - strand at 1594.392 kb on + strand, within EX28DRAFT_1580 at 1594.421 kb on + strand, within EX28DRAFT_1580 at 1594.422 kb on - strand, within EX28DRAFT_1580 at 1594.514 kb on - strand, within EX28DRAFT_1580 at 1594.514 kb on - strand, within EX28DRAFT_1580 at 1594.520 kb on + strand, within EX28DRAFT_1580 at 1594.521 kb on - strand, within EX28DRAFT_1580 at 1594.560 kb on + strand, within EX28DRAFT_1580 at 1594.569 kb on + strand, within EX28DRAFT_1580 at 1594.594 kb on + strand, within EX28DRAFT_1580 at 1594.643 kb on + strand, within EX28DRAFT_1580 at 1594.721 kb on + strand, within EX28DRAFT_1580 at 1594.721 kb on + strand, within EX28DRAFT_1580 at 1594.721 kb on + strand, within EX28DRAFT_1580 at 1594.721 kb on + strand, within EX28DRAFT_1580 at 1594.721 kb on + strand, within EX28DRAFT_1580 at 1594.724 kb on + strand, within EX28DRAFT_1580 at 1594.815 kb on + strand at 1594.816 kb on - strand at 1594.889 kb on + strand, within EX28DRAFT_1581 at 1594.890 kb on - strand, within EX28DRAFT_1581 at 1594.901 kb on + strand, within EX28DRAFT_1581 at 1594.976 kb on + strand, within EX28DRAFT_1581 at 1595.001 kb on + strand, within EX28DRAFT_1581 at 1595.001 kb on + strand, within EX28DRAFT_1581 at 1595.019 kb on - strand at 1595.019 kb on - strand at 1595.034 kb on + strand at 1595.038 kb on + strand at 1595.038 kb on + strand at 1595.199 kb on - strand at 1595.199 kb on - strand at 1595.203 kb on - strand at 1595.217 kb on + strand at 1595.218 kb on - strand at 1595.224 kb on + strand at 1595.225 kb on - strand at 1595.228 kb on + strand at 1595.325 kb on + strand at 1595.325 kb on + strand at 1595.325 kb on + strand at 1595.326 kb on - strand at 1595.326 kb on - strand at 1595.326 kb on - strand at 1595.371 kb on + strand at 1595.385 kb on - strand at 1595.385 kb on - strand at 1595.400 kb on - strand at 1595.404 kb on + strand at 1595.410 kb on - strand at 1595.439 kb on + strand at 1595.468 kb on - strand at 1595.486 kb on - strand at 1595.487 kb on + strand at 1595.491 kb on + strand at 1595.492 kb on - strand at 1595.502 kb on + strand at 1595.502 kb on + strand at 1595.503 kb on - strand at 1595.503 kb on - strand at 1595.503 kb on - strand at 1595.593 kb on - strand at 1595.612 kb on - strand at 1595.829 kb on + strand at 1595.829 kb on + strand at 1595.829 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,593,406 + +0.6 1,593,422 + +1.1 1,593,422 + -0.3 1,593,423 - -0.7 1,593,423 - -0.1 1,593,462 - +0.1 1,593,462 - -0.3 1,593,479 + +0.1 1,593,480 - -0.0 1,593,573 - +0.3 1,593,584 + +0.1 1,593,584 + -0.2 1,593,584 + -0.3 1,593,584 + +0.5 1,593,588 + -0.9 1,593,589 - -1.0 1,593,606 + +0.7 1,593,606 + +0.0 1,593,606 + +0.3 1,593,657 + -0.5 1,593,766 + +1.1 1,593,766 + +0.1 1,593,826 + +1.5 1,593,826 + +1.8 1,593,886 - -0.1 1,593,893 - -0.3 1,593,909 + +0.2 1,593,909 + -0.1 1,593,910 - +0.2 1,593,910 - -0.2 1,593,910 - -0.7 1,593,922 - +0.5 1,594,078 + EX28DRAFT_1579 0.42 -0.2 1,594,130 + EX28DRAFT_1579 0.53 +1.3 1,594,147 + EX28DRAFT_1579 0.57 +0.2 1,594,148 - EX28DRAFT_1579 0.57 -0.6 1,594,249 - EX28DRAFT_1579 0.79 +0.7 1,594,249 - EX28DRAFT_1579 0.79 -0.2 1,594,309 + -1.4 1,594,313 + -0.5 1,594,313 + +0.6 1,594,313 + +0.9 1,594,313 + +1.0 1,594,314 - -0.5 1,594,314 - +0.6 1,594,314 - +0.1 1,594,392 + EX28DRAFT_1580 0.10 +0.8 1,594,421 + EX28DRAFT_1580 0.16 +0.3 1,594,422 - EX28DRAFT_1580 0.16 +1.2 1,594,514 - EX28DRAFT_1580 0.35 -0.4 1,594,514 - EX28DRAFT_1580 0.35 -0.4 1,594,520 + EX28DRAFT_1580 0.36 +0.1 1,594,521 - EX28DRAFT_1580 0.36 +1.9 1,594,560 + EX28DRAFT_1580 0.44 +0.7 1,594,569 + EX28DRAFT_1580 0.46 -0.7 1,594,594 + EX28DRAFT_1580 0.51 +0.7 1,594,643 + EX28DRAFT_1580 0.61 +0.3 1,594,721 + EX28DRAFT_1580 0.77 +0.5 1,594,721 + EX28DRAFT_1580 0.77 -2.7 1,594,721 + EX28DRAFT_1580 0.77 -0.3 1,594,721 + EX28DRAFT_1580 0.77 +0.2 1,594,721 + EX28DRAFT_1580 0.77 -0.2 1,594,724 + EX28DRAFT_1580 0.77 +0.4 1,594,815 + +1.3 1,594,816 - +0.4 1,594,889 + EX28DRAFT_1581 0.33 -0.1 1,594,890 - EX28DRAFT_1581 0.34 +0.4 1,594,901 + EX28DRAFT_1581 0.39 -0.6 1,594,976 + EX28DRAFT_1581 0.72 -0.0 1,595,001 + EX28DRAFT_1581 0.83 -0.7 1,595,001 + EX28DRAFT_1581 0.83 +0.4 1,595,019 - +0.6 1,595,019 - -0.2 1,595,034 + +1.0 1,595,038 + -0.2 1,595,038 + +0.1 1,595,199 - +0.9 1,595,199 - -0.7 1,595,203 - +0.3 1,595,217 + +0.0 1,595,218 - -2.2 1,595,224 + +0.6 1,595,225 - +0.0 1,595,228 + +0.3 1,595,325 + -0.7 1,595,325 + -1.0 1,595,325 + -0.0 1,595,326 - +0.2 1,595,326 - -0.8 1,595,326 - -0.0 1,595,371 + +0.4 1,595,385 - +0.2 1,595,385 - -0.3 1,595,400 - -1.0 1,595,404 + -0.2 1,595,410 - -0.5 1,595,439 + -0.0 1,595,468 - -0.7 1,595,486 - +0.1 1,595,487 + +0.3 1,595,491 + +0.7 1,595,492 - +0.3 1,595,502 + +0.0 1,595,502 + +0.5 1,595,503 - +0.8 1,595,503 - -0.8 1,595,503 - +0.0 1,595,593 - +0.2 1,595,612 - -1.4 1,595,829 + +0.3 1,595,829 + -0.6 1,595,829 + -1.1
Or see this region's nucleotide sequence