Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1572 and EX28DRAFT_1573 are separated by 11 nucleotides EX28DRAFT_1573 and EX28DRAFT_1574 are separated by 80 nucleotides EX28DRAFT_1574 and EX28DRAFT_1575 are separated by 1 nucleotides
EX28DRAFT_1572: EX28DRAFT_1572 - hypothetical protein, at 1,586,113 to 1,587,066
_1572
EX28DRAFT_1573: EX28DRAFT_1573 - hypothetical protein, at 1,587,078 to 1,587,848
_1573
EX28DRAFT_1574: EX28DRAFT_1574 - Phage Mu protein F like protein, at 1,587,929 to 1,589,026
_1574
EX28DRAFT_1575: EX28DRAFT_1575 - Domain of unknown function (DUF4055), at 1,589,028 to 1,590,416
_1575
Position (kb)
1587
1588
1589
1590 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1587.033 kb on - strand at 1587.051 kb on + strand at 1587.051 kb on + strand at 1587.051 kb on + strand at 1587.052 kb on - strand at 1587.060 kb on + strand at 1587.060 kb on + strand at 1587.060 kb on + strand at 1587.072 kb on - strand at 1587.124 kb on + strand at 1587.125 kb on - strand at 1587.678 kb on - strand, within EX28DRAFT_1573 at 1587.917 kb on - strand at 1587.917 kb on - strand at 1588.000 kb on - strand at 1588.108 kb on + strand, within EX28DRAFT_1574 at 1588.108 kb on + strand, within EX28DRAFT_1574 at 1588.109 kb on - strand, within EX28DRAFT_1574 at 1588.162 kb on + strand, within EX28DRAFT_1574 at 1588.162 kb on + strand, within EX28DRAFT_1574 at 1588.248 kb on + strand, within EX28DRAFT_1574 at 1588.249 kb on - strand, within EX28DRAFT_1574 at 1588.258 kb on + strand, within EX28DRAFT_1574 at 1588.288 kb on - strand, within EX28DRAFT_1574 at 1588.307 kb on - strand, within EX28DRAFT_1574 at 1588.327 kb on + strand, within EX28DRAFT_1574 at 1588.339 kb on + strand, within EX28DRAFT_1574 at 1588.543 kb on - strand, within EX28DRAFT_1574 at 1588.650 kb on + strand, within EX28DRAFT_1574 at 1588.666 kb on + strand, within EX28DRAFT_1574 at 1588.667 kb on - strand, within EX28DRAFT_1574 at 1588.669 kb on + strand, within EX28DRAFT_1574 at 1588.735 kb on - strand, within EX28DRAFT_1574 at 1588.735 kb on - strand, within EX28DRAFT_1574 at 1588.810 kb on + strand, within EX28DRAFT_1574 at 1588.811 kb on - strand, within EX28DRAFT_1574 at 1588.889 kb on + strand, within EX28DRAFT_1574 at 1588.890 kb on - strand, within EX28DRAFT_1574 at 1588.890 kb on - strand, within EX28DRAFT_1574 at 1588.970 kb on + strand at 1589.132 kb on + strand at 1589.230 kb on + strand, within EX28DRAFT_1575 at 1589.260 kb on + strand, within EX28DRAFT_1575 at 1589.277 kb on - strand, within EX28DRAFT_1575 at 1589.277 kb on - strand, within EX28DRAFT_1575 at 1589.290 kb on + strand, within EX28DRAFT_1575 at 1589.290 kb on + strand, within EX28DRAFT_1575 at 1589.419 kb on + strand, within EX28DRAFT_1575 at 1589.581 kb on + strand, within EX28DRAFT_1575 at 1589.581 kb on + strand, within EX28DRAFT_1575 at 1589.581 kb on + strand, within EX28DRAFT_1575 at 1589.582 kb on - strand, within EX28DRAFT_1575 at 1589.620 kb on + strand, within EX28DRAFT_1575 at 1589.634 kb on - strand, within EX28DRAFT_1575 at 1589.652 kb on + strand, within EX28DRAFT_1575 at 1589.691 kb on - strand, within EX28DRAFT_1575 at 1589.691 kb on - strand, within EX28DRAFT_1575 at 1589.691 kb on - strand, within EX28DRAFT_1575 at 1589.786 kb on - strand, within EX28DRAFT_1575 at 1589.786 kb on - strand, within EX28DRAFT_1575 at 1589.880 kb on - strand, within EX28DRAFT_1575 at 1589.881 kb on + strand, within EX28DRAFT_1575 at 1589.882 kb on - strand, within EX28DRAFT_1575 at 1589.882 kb on - strand, within EX28DRAFT_1575 at 1589.920 kb on - strand, within EX28DRAFT_1575
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,587,033 - +0.1 1,587,051 + -0.5 1,587,051 + +0.1 1,587,051 + +0.4 1,587,052 - -0.2 1,587,060 + +0.3 1,587,060 + -0.4 1,587,060 + +0.3 1,587,072 - -0.3 1,587,124 + +0.1 1,587,125 - -0.1 1,587,678 - EX28DRAFT_1573 0.78 -1.0 1,587,917 - +0.1 1,587,917 - +0.7 1,588,000 - +0.2 1,588,108 + EX28DRAFT_1574 0.16 -0.4 1,588,108 + EX28DRAFT_1574 0.16 -0.0 1,588,109 - EX28DRAFT_1574 0.16 -2.8 1,588,162 + EX28DRAFT_1574 0.21 -0.2 1,588,162 + EX28DRAFT_1574 0.21 -0.5 1,588,248 + EX28DRAFT_1574 0.29 -1.4 1,588,249 - EX28DRAFT_1574 0.29 +0.8 1,588,258 + EX28DRAFT_1574 0.30 +0.2 1,588,288 - EX28DRAFT_1574 0.33 +0.5 1,588,307 - EX28DRAFT_1574 0.34 +1.2 1,588,327 + EX28DRAFT_1574 0.36 -1.7 1,588,339 + EX28DRAFT_1574 0.37 +1.4 1,588,543 - EX28DRAFT_1574 0.56 -1.4 1,588,650 + EX28DRAFT_1574 0.66 +0.1 1,588,666 + EX28DRAFT_1574 0.67 +0.7 1,588,667 - EX28DRAFT_1574 0.67 +0.2 1,588,669 + EX28DRAFT_1574 0.67 +0.0 1,588,735 - EX28DRAFT_1574 0.73 -1.2 1,588,735 - EX28DRAFT_1574 0.73 -0.5 1,588,810 + EX28DRAFT_1574 0.80 +0.3 1,588,811 - EX28DRAFT_1574 0.80 +0.7 1,588,889 + EX28DRAFT_1574 0.87 -0.9 1,588,890 - EX28DRAFT_1574 0.88 -0.7 1,588,890 - EX28DRAFT_1574 0.88 -0.9 1,588,970 + +2.7 1,589,132 + +1.4 1,589,230 + EX28DRAFT_1575 0.15 -0.3 1,589,260 + EX28DRAFT_1575 0.17 -0.4 1,589,277 - EX28DRAFT_1575 0.18 +0.7 1,589,277 - EX28DRAFT_1575 0.18 -0.4 1,589,290 + EX28DRAFT_1575 0.19 +1.0 1,589,290 + EX28DRAFT_1575 0.19 -0.6 1,589,419 + EX28DRAFT_1575 0.28 -1.3 1,589,581 + EX28DRAFT_1575 0.40 +0.8 1,589,581 + EX28DRAFT_1575 0.40 +0.1 1,589,581 + EX28DRAFT_1575 0.40 -0.5 1,589,582 - EX28DRAFT_1575 0.40 +0.3 1,589,620 + EX28DRAFT_1575 0.43 +0.2 1,589,634 - EX28DRAFT_1575 0.44 +0.8 1,589,652 + EX28DRAFT_1575 0.45 +0.5 1,589,691 - EX28DRAFT_1575 0.48 +0.5 1,589,691 - EX28DRAFT_1575 0.48 -1.8 1,589,691 - EX28DRAFT_1575 0.48 -2.7 1,589,786 - EX28DRAFT_1575 0.55 +0.4 1,589,786 - EX28DRAFT_1575 0.55 +0.3 1,589,880 - EX28DRAFT_1575 0.61 +1.4 1,589,881 + EX28DRAFT_1575 0.61 -1.3 1,589,882 - EX28DRAFT_1575 0.61 +1.7 1,589,882 - EX28DRAFT_1575 0.61 +0.9 1,589,920 - EX28DRAFT_1575 0.64 +0.6
Or see this region's nucleotide sequence