Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1522

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1520 and EX28DRAFT_1521 are separated by 22 nucleotidesEX28DRAFT_1521 and EX28DRAFT_1522 are separated by 96 nucleotidesEX28DRAFT_1522 and EX28DRAFT_1523 overlap by 29 nucleotidesEX28DRAFT_1523 and EX28DRAFT_1524 are separated by 48 nucleotides EX28DRAFT_1520: EX28DRAFT_1520 - Cation/multidrug efflux pump, at 1,533,583 to 1,536,660 _1520 EX28DRAFT_1521: EX28DRAFT_1521 - Arylamine N-acetyltransferase, at 1,536,683 to 1,537,450 _1521 EX28DRAFT_1522: EX28DRAFT_1522 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 1,537,547 to 1,539,001 _1522 EX28DRAFT_1523: EX28DRAFT_1523 - Transcriptional regulator, at 1,538,973 to 1,539,944 _1523 EX28DRAFT_1524: EX28DRAFT_1524 - Dioxygenases related to 2-nitropropane dioxygenase, at 1,539,993 to 1,540,973 _1524 Position (kb) 1537 1538 1539 1540Strain fitness (log2 ratio) -2 -1 0 1at 1536.614 kb on + strandat 1536.871 kb on + strand, within EX28DRAFT_1521at 1536.872 kb on - strand, within EX28DRAFT_1521at 1536.876 kb on + strand, within EX28DRAFT_1521at 1536.876 kb on + strand, within EX28DRAFT_1521at 1536.877 kb on - strand, within EX28DRAFT_1521at 1536.877 kb on - strand, within EX28DRAFT_1521at 1536.877 kb on - strand, within EX28DRAFT_1521at 1536.877 kb on - strand, within EX28DRAFT_1521at 1536.969 kb on + strand, within EX28DRAFT_1521at 1537.233 kb on + strand, within EX28DRAFT_1521at 1537.234 kb on - strand, within EX28DRAFT_1521at 1537.234 kb on - strand, within EX28DRAFT_1521at 1537.234 kb on - strand, within EX28DRAFT_1521at 1537.234 kb on - strand, within EX28DRAFT_1521at 1537.234 kb on - strand, within EX28DRAFT_1521at 1537.402 kb on - strandat 1537.484 kb on + strandat 1537.484 kb on + strandat 1537.484 kb on + strandat 1537.484 kb on + strandat 1537.485 kb on - strandat 1537.485 kb on - strandat 1537.485 kb on - strandat 1537.485 kb on - strandat 1537.485 kb on - strandat 1537.485 kb on - strandat 1537.485 kb on - strandat 1537.507 kb on + strandat 1537.507 kb on + strandat 1537.508 kb on - strandat 1537.585 kb on + strandat 1537.607 kb on - strandat 1537.613 kb on - strandat 1537.761 kb on - strand, within EX28DRAFT_1522at 1538.563 kb on - strand, within EX28DRAFT_1522at 1538.643 kb on - strand, within EX28DRAFT_1522at 1538.874 kb on + strandat 1539.105 kb on + strand, within EX28DRAFT_1523at 1539.105 kb on + strand, within EX28DRAFT_1523at 1539.105 kb on + strand, within EX28DRAFT_1523at 1539.106 kb on - strand, within EX28DRAFT_1523at 1539.106 kb on - strand, within EX28DRAFT_1523at 1539.106 kb on - strand, within EX28DRAFT_1523at 1539.109 kb on + strand, within EX28DRAFT_1523at 1539.109 kb on + strand, within EX28DRAFT_1523at 1539.110 kb on - strand, within EX28DRAFT_1523at 1539.110 kb on - strand, within EX28DRAFT_1523at 1539.110 kb on - strand, within EX28DRAFT_1523at 1539.173 kb on - strand, within EX28DRAFT_1523at 1539.173 kb on - strand, within EX28DRAFT_1523at 1539.213 kb on - strand, within EX28DRAFT_1523at 1539.239 kb on + strand, within EX28DRAFT_1523at 1539.239 kb on + strand, within EX28DRAFT_1523at 1539.240 kb on - strand, within EX28DRAFT_1523at 1539.272 kb on + strand, within EX28DRAFT_1523at 1539.395 kb on + strand, within EX28DRAFT_1523at 1539.397 kb on + strand, within EX28DRAFT_1523at 1539.398 kb on - strand, within EX28DRAFT_1523at 1539.585 kb on + strand, within EX28DRAFT_1523at 1539.585 kb on + strand, within EX28DRAFT_1523at 1539.616 kb on - strand, within EX28DRAFT_1523at 1539.684 kb on - strand, within EX28DRAFT_1523at 1539.955 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,536,614 + +0.3
1,536,871 + EX28DRAFT_1521 0.24 +0.2
1,536,872 - EX28DRAFT_1521 0.25 -0.1
1,536,876 + EX28DRAFT_1521 0.25 -1.0
1,536,876 + EX28DRAFT_1521 0.25 -0.8
1,536,877 - EX28DRAFT_1521 0.25 +1.0
1,536,877 - EX28DRAFT_1521 0.25 +0.0
1,536,877 - EX28DRAFT_1521 0.25 -0.3
1,536,877 - EX28DRAFT_1521 0.25 -0.1
1,536,969 + EX28DRAFT_1521 0.37 +0.2
1,537,233 + EX28DRAFT_1521 0.72 +0.2
1,537,234 - EX28DRAFT_1521 0.72 +0.4
1,537,234 - EX28DRAFT_1521 0.72 +0.6
1,537,234 - EX28DRAFT_1521 0.72 +0.5
1,537,234 - EX28DRAFT_1521 0.72 -1.8
1,537,234 - EX28DRAFT_1521 0.72 -0.3
1,537,402 - +0.1
1,537,484 + -0.7
1,537,484 + -0.3
1,537,484 + +0.2
1,537,484 + +0.0
1,537,485 - -1.0
1,537,485 - +0.7
1,537,485 - +0.5
1,537,485 - +0.2
1,537,485 - +0.2
1,537,485 - +0.2
1,537,485 - +0.5
1,537,507 + +0.2
1,537,507 + +0.4
1,537,508 - +0.4
1,537,585 + +0.8
1,537,607 - +0.4
1,537,613 - +0.4
1,537,761 - EX28DRAFT_1522 0.15 +0.1
1,538,563 - EX28DRAFT_1522 0.70 +0.6
1,538,643 - EX28DRAFT_1522 0.75 +0.7
1,538,874 + +0.1
1,539,105 + EX28DRAFT_1523 0.14 -0.1
1,539,105 + EX28DRAFT_1523 0.14 +0.1
1,539,105 + EX28DRAFT_1523 0.14 -0.0
1,539,106 - EX28DRAFT_1523 0.14 -1.0
1,539,106 - EX28DRAFT_1523 0.14 +0.4
1,539,106 - EX28DRAFT_1523 0.14 +0.3
1,539,109 + EX28DRAFT_1523 0.14 +0.6
1,539,109 + EX28DRAFT_1523 0.14 -0.2
1,539,110 - EX28DRAFT_1523 0.14 -0.1
1,539,110 - EX28DRAFT_1523 0.14 +0.5
1,539,110 - EX28DRAFT_1523 0.14 -0.4
1,539,173 - EX28DRAFT_1523 0.21 +0.8
1,539,173 - EX28DRAFT_1523 0.21 +0.1
1,539,213 - EX28DRAFT_1523 0.25 -0.6
1,539,239 + EX28DRAFT_1523 0.27 +0.8
1,539,239 + EX28DRAFT_1523 0.27 +0.1
1,539,240 - EX28DRAFT_1523 0.27 +0.2
1,539,272 + EX28DRAFT_1523 0.31 +0.3
1,539,395 + EX28DRAFT_1523 0.43 +0.4
1,539,397 + EX28DRAFT_1523 0.44 +0.3
1,539,398 - EX28DRAFT_1523 0.44 +0.7
1,539,585 + EX28DRAFT_1523 0.63 -0.1
1,539,585 + EX28DRAFT_1523 0.63 -1.6
1,539,616 - EX28DRAFT_1523 0.66 -0.0
1,539,684 - EX28DRAFT_1523 0.73 -0.8
1,539,955 + -0.0

Or see this region's nucleotide sequence