Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1488 and EX28DRAFT_1489 are separated by 8 nucleotides EX28DRAFT_1489 and EX28DRAFT_1490 overlap by 1 nucleotides EX28DRAFT_1490 and EX28DRAFT_1491 are separated by 102 nucleotides
EX28DRAFT_1488: EX28DRAFT_1488 - Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein), at 1,502,248 to 1,503,147
_1488
EX28DRAFT_1489: EX28DRAFT_1489 - ABC-type proline/glycine betaine transport systems, permease component, at 1,503,156 to 1,503,803
_1489
EX28DRAFT_1490: EX28DRAFT_1490 - glycine betaine/L-proline transport ATP binding subunit, at 1,503,803 to 1,504,951
_1490
EX28DRAFT_1491: EX28DRAFT_1491 - Chloride channel protein EriC, at 1,505,054 to 1,506,364
_1491
Position (kb)
1503
1504
1505 Strain fitness (log2 ratio)
-2
-1
0
1 at 1502.845 kb on + strand, within EX28DRAFT_1488 at 1502.846 kb on - strand, within EX28DRAFT_1488 at 1502.848 kb on - strand, within EX28DRAFT_1488 at 1502.887 kb on + strand, within EX28DRAFT_1488 at 1503.171 kb on + strand at 1503.807 kb on + strand at 1503.807 kb on + strand at 1503.807 kb on + strand at 1504.052 kb on + strand, within EX28DRAFT_1490 at 1504.052 kb on + strand, within EX28DRAFT_1490 at 1504.135 kb on + strand, within EX28DRAFT_1490 at 1504.612 kb on + strand, within EX28DRAFT_1490 at 1504.649 kb on - strand, within EX28DRAFT_1490 at 1504.815 kb on - strand, within EX28DRAFT_1490 at 1504.826 kb on - strand, within EX28DRAFT_1490 at 1504.886 kb on + strand at 1504.886 kb on + strand at 1504.887 kb on - strand at 1504.888 kb on + strand at 1504.899 kb on - strand at 1505.024 kb on + strand at 1505.024 kb on + strand at 1505.029 kb on + strand at 1505.030 kb on - strand at 1505.043 kb on - strand at 1505.059 kb on - strand at 1505.069 kb on - strand at 1505.072 kb on + strand at 1505.073 kb on - strand at 1505.073 kb on - strand at 1505.168 kb on + strand at 1505.342 kb on + strand, within EX28DRAFT_1491 at 1505.570 kb on + strand, within EX28DRAFT_1491 at 1505.571 kb on - strand, within EX28DRAFT_1491
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,502,845 + EX28DRAFT_1488 0.66 +0.1 1,502,846 - EX28DRAFT_1488 0.66 +1.7 1,502,848 - EX28DRAFT_1488 0.67 +0.1 1,502,887 + EX28DRAFT_1488 0.71 +0.4 1,503,171 + -0.8 1,503,807 + -0.0 1,503,807 + -1.7 1,503,807 + -0.2 1,504,052 + EX28DRAFT_1490 0.22 +1.0 1,504,052 + EX28DRAFT_1490 0.22 +0.8 1,504,135 + EX28DRAFT_1490 0.29 +0.1 1,504,612 + EX28DRAFT_1490 0.70 -2.3 1,504,649 - EX28DRAFT_1490 0.74 +0.1 1,504,815 - EX28DRAFT_1490 0.88 +0.6 1,504,826 - EX28DRAFT_1490 0.89 +0.3 1,504,886 + +0.0 1,504,886 + +0.4 1,504,887 - +0.2 1,504,888 + +0.2 1,504,899 - +0.2 1,505,024 + +0.2 1,505,024 + -0.3 1,505,029 + +0.3 1,505,030 - +0.6 1,505,043 - +0.4 1,505,059 - +0.4 1,505,069 - -0.1 1,505,072 + +0.3 1,505,073 - -2.2 1,505,073 - -0.5 1,505,168 + -0.2 1,505,342 + EX28DRAFT_1491 0.22 +0.0 1,505,570 + EX28DRAFT_1491 0.39 -1.2 1,505,571 - EX28DRAFT_1491 0.39 -0.5
Or see this region's nucleotide sequence