Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1455 and EX28DRAFT_1456 are separated by 73 nucleotides EX28DRAFT_1456 and EX28DRAFT_1457 are separated by 14 nucleotides
EX28DRAFT_1455: EX28DRAFT_1455 - Sugar phosphate permease, at 1,468,683 to 1,470,050
_1455
EX28DRAFT_1456: EX28DRAFT_1456 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 1,470,124 to 1,471,143
_1456
EX28DRAFT_1457: EX28DRAFT_1457 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 1,471,158 to 1,472,372
_1457
Position (kb)
1470
1471
1472 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1469.125 kb on + strand, within EX28DRAFT_1455 at 1469.180 kb on + strand, within EX28DRAFT_1455 at 1469.181 kb on - strand, within EX28DRAFT_1455 at 1469.360 kb on + strand, within EX28DRAFT_1455 at 1469.361 kb on - strand, within EX28DRAFT_1455 at 1469.361 kb on - strand, within EX28DRAFT_1455 at 1469.561 kb on + strand, within EX28DRAFT_1455 at 1469.723 kb on - strand, within EX28DRAFT_1455 at 1469.826 kb on - strand, within EX28DRAFT_1455 at 1469.840 kb on + strand, within EX28DRAFT_1455 at 1469.841 kb on - strand, within EX28DRAFT_1455 at 1469.841 kb on - strand, within EX28DRAFT_1455 at 1469.841 kb on - strand, within EX28DRAFT_1455 at 1469.841 kb on - strand, within EX28DRAFT_1455 at 1469.847 kb on + strand, within EX28DRAFT_1455 at 1469.847 kb on + strand, within EX28DRAFT_1455 at 1469.848 kb on - strand, within EX28DRAFT_1455 at 1469.848 kb on - strand, within EX28DRAFT_1455 at 1469.848 kb on - strand, within EX28DRAFT_1455 at 1469.851 kb on + strand, within EX28DRAFT_1455 at 1469.851 kb on + strand, within EX28DRAFT_1455 at 1469.863 kb on + strand, within EX28DRAFT_1455 at 1469.863 kb on + strand, within EX28DRAFT_1455 at 1469.864 kb on - strand, within EX28DRAFT_1455 at 1470.050 kb on + strand at 1470.050 kb on + strand at 1470.071 kb on - strand at 1470.086 kb on + strand at 1470.087 kb on - strand at 1470.087 kb on - strand at 1470.117 kb on + strand at 1470.196 kb on + strand at 1470.593 kb on + strand, within EX28DRAFT_1456 at 1470.594 kb on - strand, within EX28DRAFT_1456 at 1470.594 kb on - strand, within EX28DRAFT_1456 at 1470.594 kb on - strand, within EX28DRAFT_1456 at 1470.644 kb on + strand, within EX28DRAFT_1456 at 1470.645 kb on - strand, within EX28DRAFT_1456 at 1471.013 kb on + strand, within EX28DRAFT_1456 at 1471.013 kb on + strand, within EX28DRAFT_1456 at 1471.133 kb on - strand at 1471.283 kb on + strand, within EX28DRAFT_1457 at 1471.283 kb on + strand, within EX28DRAFT_1457 at 1471.347 kb on - strand, within EX28DRAFT_1457 at 1471.347 kb on - strand, within EX28DRAFT_1457 at 1471.348 kb on + strand, within EX28DRAFT_1457 at 1471.348 kb on + strand, within EX28DRAFT_1457 at 1471.348 kb on + strand, within EX28DRAFT_1457 at 1471.356 kb on + strand, within EX28DRAFT_1457 at 1471.357 kb on - strand, within EX28DRAFT_1457 at 1471.525 kb on + strand, within EX28DRAFT_1457 at 1471.526 kb on - strand, within EX28DRAFT_1457 at 1471.578 kb on + strand, within EX28DRAFT_1457 at 1471.579 kb on - strand, within EX28DRAFT_1457 at 1471.579 kb on - strand, within EX28DRAFT_1457 at 1471.608 kb on - strand, within EX28DRAFT_1457 at 1471.811 kb on - strand, within EX28DRAFT_1457
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,469,125 + EX28DRAFT_1455 0.32 -0.2 1,469,180 + EX28DRAFT_1455 0.36 -0.2 1,469,181 - EX28DRAFT_1455 0.36 -1.3 1,469,360 + EX28DRAFT_1455 0.49 -0.1 1,469,361 - EX28DRAFT_1455 0.50 -0.6 1,469,361 - EX28DRAFT_1455 0.50 -1.4 1,469,561 + EX28DRAFT_1455 0.64 +0.2 1,469,723 - EX28DRAFT_1455 0.76 +0.1 1,469,826 - EX28DRAFT_1455 0.84 +0.5 1,469,840 + EX28DRAFT_1455 0.85 +0.7 1,469,841 - EX28DRAFT_1455 0.85 +0.2 1,469,841 - EX28DRAFT_1455 0.85 -1.2 1,469,841 - EX28DRAFT_1455 0.85 +1.0 1,469,841 - EX28DRAFT_1455 0.85 +0.6 1,469,847 + EX28DRAFT_1455 0.85 -0.6 1,469,847 + EX28DRAFT_1455 0.85 +0.1 1,469,848 - EX28DRAFT_1455 0.85 +0.3 1,469,848 - EX28DRAFT_1455 0.85 +2.3 1,469,848 - EX28DRAFT_1455 0.85 -0.9 1,469,851 + EX28DRAFT_1455 0.85 +0.0 1,469,851 + EX28DRAFT_1455 0.85 -1.2 1,469,863 + EX28DRAFT_1455 0.86 +0.9 1,469,863 + EX28DRAFT_1455 0.86 -0.3 1,469,864 - EX28DRAFT_1455 0.86 +1.0 1,470,050 + +0.4 1,470,050 + +0.1 1,470,071 - -0.0 1,470,086 + -0.0 1,470,087 - -3.7 1,470,087 - +0.1 1,470,117 + +0.3 1,470,196 + -1.3 1,470,593 + EX28DRAFT_1456 0.46 -0.7 1,470,594 - EX28DRAFT_1456 0.46 -0.8 1,470,594 - EX28DRAFT_1456 0.46 -0.5 1,470,594 - EX28DRAFT_1456 0.46 -0.0 1,470,644 + EX28DRAFT_1456 0.51 -0.3 1,470,645 - EX28DRAFT_1456 0.51 -0.3 1,471,013 + EX28DRAFT_1456 0.87 +0.3 1,471,013 + EX28DRAFT_1456 0.87 -0.0 1,471,133 - -3.0 1,471,283 + EX28DRAFT_1457 0.10 -0.2 1,471,283 + EX28DRAFT_1457 0.10 -0.2 1,471,347 - EX28DRAFT_1457 0.16 +0.1 1,471,347 - EX28DRAFT_1457 0.16 -0.1 1,471,348 + EX28DRAFT_1457 0.16 -0.3 1,471,348 + EX28DRAFT_1457 0.16 +0.6 1,471,348 + EX28DRAFT_1457 0.16 -0.0 1,471,356 + EX28DRAFT_1457 0.16 +0.3 1,471,357 - EX28DRAFT_1457 0.16 +1.1 1,471,525 + EX28DRAFT_1457 0.30 +0.9 1,471,526 - EX28DRAFT_1457 0.30 -0.8 1,471,578 + EX28DRAFT_1457 0.35 +0.4 1,471,579 - EX28DRAFT_1457 0.35 +0.1 1,471,579 - EX28DRAFT_1457 0.35 +0.9 1,471,608 - EX28DRAFT_1457 0.37 -0.4 1,471,811 - EX28DRAFT_1457 0.54 -0.6
Or see this region's nucleotide sequence