Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1409 and EX28DRAFT_1410 are separated by 143 nucleotides EX28DRAFT_1410 and EX28DRAFT_1411 are separated by 27 nucleotides
EX28DRAFT_1409: EX28DRAFT_1409 - transcriptional regulator, PaaX family, at 1,417,287 to 1,418,213
_1409
EX28DRAFT_1410: EX28DRAFT_1410 - phenylacetate-CoA ligase (EC 6.2.1.30), at 1,418,357 to 1,419,673
_1410
EX28DRAFT_1411: EX28DRAFT_1411 - 3-oxoadipyl-CoA thiolase, at 1,419,701 to 1,420,906
_1411
Position (kb) 1418
1419
1420 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1417.408 kb on + strand, within EX28DRAFT_1409 at 1417.409 kb on - strand, within EX28DRAFT_1409 at 1417.415 kb on + strand, within EX28DRAFT_1409 at 1417.618 kb on + strand, within EX28DRAFT_1409 at 1417.619 kb on - strand, within EX28DRAFT_1409 at 1418.135 kb on - strand at 1418.147 kb on + strand at 1418.231 kb on + strand at 1418.259 kb on - strand at 1418.473 kb on + strand at 1418.473 kb on + strand at 1418.961 kb on + strand, within EX28DRAFT_1410 at 1418.961 kb on + strand, within EX28DRAFT_1410 at 1418.961 kb on + strand, within EX28DRAFT_1410 at 1418.961 kb on + strand, within EX28DRAFT_1410 at 1418.961 kb on + strand, within EX28DRAFT_1410 at 1418.962 kb on - strand, within EX28DRAFT_1410 at 1418.965 kb on + strand, within EX28DRAFT_1410 at 1419.136 kb on + strand, within EX28DRAFT_1410 at 1419.136 kb on + strand, within EX28DRAFT_1410 at 1419.137 kb on - strand, within EX28DRAFT_1410 at 1419.267 kb on + strand, within EX28DRAFT_1410 at 1419.407 kb on - strand, within EX28DRAFT_1410 at 1419.451 kb on - strand, within EX28DRAFT_1410 at 1419.454 kb on + strand, within EX28DRAFT_1410 at 1419.454 kb on + strand, within EX28DRAFT_1410 at 1419.454 kb on + strand, within EX28DRAFT_1410 at 1419.556 kb on - strand at 1419.556 kb on - strand at 1419.574 kb on - strand at 1419.621 kb on - strand at 1419.664 kb on + strand at 1419.664 kb on + strand at 1419.665 kb on - strand at 1419.676 kb on + strand at 1419.676 kb on + strand at 1419.754 kb on + strand at 1419.754 kb on + strand at 1419.755 kb on - strand at 1419.968 kb on - strand, within EX28DRAFT_1411 at 1419.968 kb on - strand, within EX28DRAFT_1411 at 1420.079 kb on + strand, within EX28DRAFT_1411 at 1420.420 kb on + strand, within EX28DRAFT_1411 at 1420.420 kb on + strand, within EX28DRAFT_1411 at 1420.420 kb on + strand, within EX28DRAFT_1411 at 1420.421 kb on - strand, within EX28DRAFT_1411
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,417,408 + EX28DRAFT_1409 0.13 -0.3 1,417,409 - EX28DRAFT_1409 0.13 +0.5 1,417,415 + EX28DRAFT_1409 0.14 +0.3 1,417,618 + EX28DRAFT_1409 0.36 +0.4 1,417,619 - EX28DRAFT_1409 0.36 +0.1 1,418,135 - +1.1 1,418,147 + +0.6 1,418,231 + +0.0 1,418,259 - -1.1 1,418,473 + -0.0 1,418,473 + +0.6 1,418,961 + EX28DRAFT_1410 0.46 -0.9 1,418,961 + EX28DRAFT_1410 0.46 -2.1 1,418,961 + EX28DRAFT_1410 0.46 -1.4 1,418,961 + EX28DRAFT_1410 0.46 -0.3 1,418,961 + EX28DRAFT_1410 0.46 -1.6 1,418,962 - EX28DRAFT_1410 0.46 +0.7 1,418,965 + EX28DRAFT_1410 0.46 -0.1 1,419,136 + EX28DRAFT_1410 0.59 -0.1 1,419,136 + EX28DRAFT_1410 0.59 -1.6 1,419,137 - EX28DRAFT_1410 0.59 +1.0 1,419,267 + EX28DRAFT_1410 0.69 +0.3 1,419,407 - EX28DRAFT_1410 0.80 -0.4 1,419,451 - EX28DRAFT_1410 0.83 -0.1 1,419,454 + EX28DRAFT_1410 0.83 -0.0 1,419,454 + EX28DRAFT_1410 0.83 -1.1 1,419,454 + EX28DRAFT_1410 0.83 +0.5 1,419,556 - +0.4 1,419,556 - +1.2 1,419,574 - +0.6 1,419,621 - +0.5 1,419,664 + +0.3 1,419,664 + -0.8 1,419,665 - -0.1 1,419,676 + -1.1 1,419,676 + -0.4 1,419,754 + -1.4 1,419,754 + +2.3 1,419,755 - +1.3 1,419,968 - EX28DRAFT_1411 0.22 -0.1 1,419,968 - EX28DRAFT_1411 0.22 +0.6 1,420,079 + EX28DRAFT_1411 0.31 +0.2 1,420,420 + EX28DRAFT_1411 0.60 +0.6 1,420,420 + EX28DRAFT_1411 0.60 -0.1 1,420,420 + EX28DRAFT_1411 0.60 +0.4 1,420,421 - EX28DRAFT_1411 0.60 +0.0
Or see this region's nucleotide sequence