Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1359 and EX28DRAFT_1360 are separated by 7 nucleotides EX28DRAFT_1360 and EX28DRAFT_1361 are separated by 311 nucleotides EX28DRAFT_1361 and EX28DRAFT_1362 are separated by 10 nucleotides EX28DRAFT_1362 and EX28DRAFT_1363 are separated by 213 nucleotides
EX28DRAFT_1359: EX28DRAFT_1359 - Pseudouridylate synthases, 23S RNA-specific, at 1,377,609 to 1,378,295
_1359
EX28DRAFT_1360: EX28DRAFT_1360 - Uncharacterized protein conserved in bacteria, at 1,378,303 to 1,378,842
_1360
EX28DRAFT_1361: EX28DRAFT_1361 - hypothetical protein, at 1,379,154 to 1,380,269
_1361
EX28DRAFT_1362: EX28DRAFT_1362 - hypothetical protein, at 1,380,280 to 1,380,963
_1362
EX28DRAFT_1363: EX28DRAFT_1363 - Domain of unknown function (DUF1852), at 1,381,177 to 1,382,151
_1363
Position (kb)
1379
1380
1381 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1378.170 kb on + strand, within EX28DRAFT_1359 at 1378.242 kb on - strand at 1378.440 kb on + strand, within EX28DRAFT_1360 at 1378.569 kb on + strand, within EX28DRAFT_1360 at 1378.708 kb on - strand, within EX28DRAFT_1360 at 1378.877 kb on + strand at 1378.911 kb on + strand at 1379.035 kb on + strand at 1379.036 kb on - strand at 1379.036 kb on - strand at 1379.051 kb on + strand at 1379.326 kb on + strand, within EX28DRAFT_1361 at 1379.326 kb on + strand, within EX28DRAFT_1361 at 1379.326 kb on + strand, within EX28DRAFT_1361 at 1379.327 kb on - strand, within EX28DRAFT_1361 at 1379.347 kb on - strand, within EX28DRAFT_1361 at 1379.382 kb on + strand, within EX28DRAFT_1361 at 1379.382 kb on + strand, within EX28DRAFT_1361 at 1379.529 kb on + strand, within EX28DRAFT_1361 at 1379.530 kb on - strand, within EX28DRAFT_1361 at 1379.530 kb on - strand, within EX28DRAFT_1361 at 1379.532 kb on - strand, within EX28DRAFT_1361 at 1379.532 kb on - strand, within EX28DRAFT_1361 at 1379.532 kb on - strand, within EX28DRAFT_1361 at 1379.532 kb on - strand, within EX28DRAFT_1361 at 1379.700 kb on + strand, within EX28DRAFT_1361 at 1379.700 kb on + strand, within EX28DRAFT_1361 at 1379.700 kb on + strand, within EX28DRAFT_1361 at 1379.700 kb on + strand, within EX28DRAFT_1361 at 1379.794 kb on + strand, within EX28DRAFT_1361 at 1379.802 kb on - strand, within EX28DRAFT_1361 at 1379.907 kb on + strand, within EX28DRAFT_1361 at 1379.907 kb on + strand, within EX28DRAFT_1361 at 1379.911 kb on + strand, within EX28DRAFT_1361 at 1379.912 kb on - strand, within EX28DRAFT_1361 at 1379.912 kb on - strand, within EX28DRAFT_1361 at 1379.912 kb on - strand, within EX28DRAFT_1361 at 1379.941 kb on + strand, within EX28DRAFT_1361 at 1379.941 kb on + strand, within EX28DRAFT_1361 at 1379.941 kb on + strand, within EX28DRAFT_1361 at 1379.941 kb on + strand, within EX28DRAFT_1361 at 1379.942 kb on - strand, within EX28DRAFT_1361 at 1379.942 kb on - strand, within EX28DRAFT_1361 at 1379.988 kb on + strand, within EX28DRAFT_1361 at 1380.011 kb on + strand, within EX28DRAFT_1361 at 1380.011 kb on + strand, within EX28DRAFT_1361 at 1380.055 kb on - strand, within EX28DRAFT_1361 at 1380.065 kb on + strand, within EX28DRAFT_1361 at 1380.065 kb on + strand, within EX28DRAFT_1361 at 1380.066 kb on - strand, within EX28DRAFT_1361 at 1380.066 kb on - strand, within EX28DRAFT_1361 at 1380.104 kb on - strand, within EX28DRAFT_1361 at 1380.138 kb on - strand, within EX28DRAFT_1361 at 1380.141 kb on + strand, within EX28DRAFT_1361 at 1380.207 kb on - strand at 1380.219 kb on + strand at 1380.257 kb on - strand at 1380.257 kb on - strand at 1380.275 kb on + strand at 1380.296 kb on + strand at 1380.352 kb on - strand, within EX28DRAFT_1362 at 1380.352 kb on - strand, within EX28DRAFT_1362 at 1380.461 kb on + strand, within EX28DRAFT_1362 at 1380.484 kb on - strand, within EX28DRAFT_1362 at 1380.489 kb on + strand, within EX28DRAFT_1362 at 1380.510 kb on + strand, within EX28DRAFT_1362 at 1380.510 kb on + strand, within EX28DRAFT_1362 at 1380.546 kb on - strand, within EX28DRAFT_1362 at 1380.608 kb on - strand, within EX28DRAFT_1362 at 1380.647 kb on - strand, within EX28DRAFT_1362 at 1380.726 kb on + strand, within EX28DRAFT_1362 at 1380.749 kb on - strand, within EX28DRAFT_1362 at 1380.749 kb on - strand, within EX28DRAFT_1362 at 1380.767 kb on + strand, within EX28DRAFT_1362 at 1380.785 kb on - strand, within EX28DRAFT_1362 at 1380.813 kb on - strand, within EX28DRAFT_1362 at 1380.831 kb on + strand, within EX28DRAFT_1362 at 1380.831 kb on + strand, within EX28DRAFT_1362 at 1380.832 kb on - strand, within EX28DRAFT_1362 at 1380.832 kb on - strand, within EX28DRAFT_1362 at 1380.882 kb on + strand, within EX28DRAFT_1362 at 1380.898 kb on + strand at 1380.898 kb on + strand at 1380.918 kb on + strand at 1380.918 kb on + strand at 1380.951 kb on + strand at 1381.044 kb on - strand at 1381.128 kb on + strand at 1381.195 kb on + strand at 1381.196 kb on - strand at 1381.196 kb on - strand at 1381.196 kb on - strand at 1381.196 kb on - strand at 1381.197 kb on + strand at 1381.197 kb on + strand at 1381.197 kb on + strand at 1381.228 kb on + strand at 1381.228 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,378,170 + EX28DRAFT_1359 0.82 -0.3 1,378,242 - +0.4 1,378,440 + EX28DRAFT_1360 0.25 +0.5 1,378,569 + EX28DRAFT_1360 0.49 -0.1 1,378,708 - EX28DRAFT_1360 0.75 -0.7 1,378,877 + +0.1 1,378,911 + +0.6 1,379,035 + -0.4 1,379,036 - +0.1 1,379,036 - +0.4 1,379,051 + -1.0 1,379,326 + EX28DRAFT_1361 0.15 +1.1 1,379,326 + EX28DRAFT_1361 0.15 -0.7 1,379,326 + EX28DRAFT_1361 0.15 -0.4 1,379,327 - EX28DRAFT_1361 0.16 -0.5 1,379,347 - EX28DRAFT_1361 0.17 -0.7 1,379,382 + EX28DRAFT_1361 0.20 -0.1 1,379,382 + EX28DRAFT_1361 0.20 -1.1 1,379,529 + EX28DRAFT_1361 0.34 +0.5 1,379,530 - EX28DRAFT_1361 0.34 -1.6 1,379,530 - EX28DRAFT_1361 0.34 -0.3 1,379,532 - EX28DRAFT_1361 0.34 +0.5 1,379,532 - EX28DRAFT_1361 0.34 -0.5 1,379,532 - EX28DRAFT_1361 0.34 -2.1 1,379,532 - EX28DRAFT_1361 0.34 -1.2 1,379,700 + EX28DRAFT_1361 0.49 -0.4 1,379,700 + EX28DRAFT_1361 0.49 -2.9 1,379,700 + EX28DRAFT_1361 0.49 +0.5 1,379,700 + EX28DRAFT_1361 0.49 +0.1 1,379,794 + EX28DRAFT_1361 0.57 +1.2 1,379,802 - EX28DRAFT_1361 0.58 -1.3 1,379,907 + EX28DRAFT_1361 0.67 -0.1 1,379,907 + EX28DRAFT_1361 0.67 -0.5 1,379,911 + EX28DRAFT_1361 0.68 +0.3 1,379,912 - EX28DRAFT_1361 0.68 -0.1 1,379,912 - EX28DRAFT_1361 0.68 -0.7 1,379,912 - EX28DRAFT_1361 0.68 -1.3 1,379,941 + EX28DRAFT_1361 0.71 -0.2 1,379,941 + EX28DRAFT_1361 0.71 +1.2 1,379,941 + EX28DRAFT_1361 0.71 +0.1 1,379,941 + EX28DRAFT_1361 0.71 -1.4 1,379,942 - EX28DRAFT_1361 0.71 +0.3 1,379,942 - EX28DRAFT_1361 0.71 +0.3 1,379,988 + EX28DRAFT_1361 0.75 -1.4 1,380,011 + EX28DRAFT_1361 0.77 -1.1 1,380,011 + EX28DRAFT_1361 0.77 +0.7 1,380,055 - EX28DRAFT_1361 0.81 +0.4 1,380,065 + EX28DRAFT_1361 0.82 -0.2 1,380,065 + EX28DRAFT_1361 0.82 -2.1 1,380,066 - EX28DRAFT_1361 0.82 +0.6 1,380,066 - EX28DRAFT_1361 0.82 -0.5 1,380,104 - EX28DRAFT_1361 0.85 -0.4 1,380,138 - EX28DRAFT_1361 0.88 -0.0 1,380,141 + EX28DRAFT_1361 0.88 -0.1 1,380,207 - +0.5 1,380,219 + -0.2 1,380,257 - +0.6 1,380,257 - -0.1 1,380,275 + -0.7 1,380,296 + +0.3 1,380,352 - EX28DRAFT_1362 0.11 -0.4 1,380,352 - EX28DRAFT_1362 0.11 -0.8 1,380,461 + EX28DRAFT_1362 0.26 +1.0 1,380,484 - EX28DRAFT_1362 0.30 +0.3 1,380,489 + EX28DRAFT_1362 0.31 -0.6 1,380,510 + EX28DRAFT_1362 0.34 -0.5 1,380,510 + EX28DRAFT_1362 0.34 +1.8 1,380,546 - EX28DRAFT_1362 0.39 +0.0 1,380,608 - EX28DRAFT_1362 0.48 +0.6 1,380,647 - EX28DRAFT_1362 0.54 -0.9 1,380,726 + EX28DRAFT_1362 0.65 -0.2 1,380,749 - EX28DRAFT_1362 0.69 +0.1 1,380,749 - EX28DRAFT_1362 0.69 -1.0 1,380,767 + EX28DRAFT_1362 0.71 -0.6 1,380,785 - EX28DRAFT_1362 0.74 -0.4 1,380,813 - EX28DRAFT_1362 0.78 -0.1 1,380,831 + EX28DRAFT_1362 0.81 +0.8 1,380,831 + EX28DRAFT_1362 0.81 +0.0 1,380,832 - EX28DRAFT_1362 0.81 -0.0 1,380,832 - EX28DRAFT_1362 0.81 +0.6 1,380,882 + EX28DRAFT_1362 0.88 +0.5 1,380,898 + +0.1 1,380,898 + +0.1 1,380,918 + -0.6 1,380,918 + +0.6 1,380,951 + -0.2 1,381,044 - -0.7 1,381,128 + -0.8 1,381,195 + -0.4 1,381,196 - -0.5 1,381,196 - -0.5 1,381,196 - -3.7 1,381,196 - -1.3 1,381,197 + -0.1 1,381,197 + +0.0 1,381,197 + -0.4 1,381,228 + +0.2 1,381,228 + -0.4
Or see this region's nucleotide sequence