Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1351 and EX28DRAFT_1352 are separated by 389 nucleotides EX28DRAFT_1352 and EX28DRAFT_1353 are separated by 158 nucleotides
EX28DRAFT_1351: EX28DRAFT_1351 - Uncharacterized conserved protein, at 1,365,204 to 1,365,998
_1351
EX28DRAFT_1352: EX28DRAFT_1352 - Arabinose efflux permease, at 1,366,388 to 1,367,707
_1352
EX28DRAFT_1353: EX28DRAFT_1353 - Major Facilitator Superfamily, at 1,367,866 to 1,369,518
_1353
Position (kb)
1366
1367
1368 Strain fitness (log2 ratio)
-1
0
1 at 1365.627 kb on - strand, within EX28DRAFT_1351 at 1365.760 kb on + strand, within EX28DRAFT_1351 at 1365.761 kb on - strand, within EX28DRAFT_1351 at 1365.945 kb on - strand at 1366.149 kb on + strand at 1366.149 kb on + strand at 1366.152 kb on + strand at 1366.153 kb on - strand at 1366.173 kb on + strand at 1366.195 kb on - strand at 1366.195 kb on - strand at 1366.195 kb on - strand at 1366.224 kb on - strand at 1366.224 kb on - strand at 1366.358 kb on + strand at 1366.358 kb on + strand at 1366.359 kb on - strand at 1366.359 kb on - strand at 1366.359 kb on - strand at 1366.359 kb on - strand at 1366.417 kb on - strand at 1366.519 kb on + strand at 1366.568 kb on + strand, within EX28DRAFT_1352 at 1366.568 kb on + strand, within EX28DRAFT_1352 at 1366.569 kb on - strand, within EX28DRAFT_1352 at 1366.628 kb on - strand, within EX28DRAFT_1352 at 1366.648 kb on + strand, within EX28DRAFT_1352 at 1366.718 kb on + strand, within EX28DRAFT_1352 at 1366.718 kb on + strand, within EX28DRAFT_1352 at 1366.718 kb on + strand, within EX28DRAFT_1352 at 1366.719 kb on - strand, within EX28DRAFT_1352 at 1366.765 kb on + strand, within EX28DRAFT_1352 at 1366.826 kb on + strand, within EX28DRAFT_1352 at 1367.116 kb on - strand, within EX28DRAFT_1352 at 1367.159 kb on + strand, within EX28DRAFT_1352 at 1367.159 kb on + strand, within EX28DRAFT_1352 at 1367.160 kb on - strand, within EX28DRAFT_1352 at 1367.186 kb on + strand, within EX28DRAFT_1352 at 1367.186 kb on + strand, within EX28DRAFT_1352 at 1367.186 kb on + strand, within EX28DRAFT_1352 at 1367.263 kb on + strand, within EX28DRAFT_1352 at 1367.263 kb on + strand, within EX28DRAFT_1352 at 1367.315 kb on + strand, within EX28DRAFT_1352 at 1367.316 kb on - strand, within EX28DRAFT_1352 at 1367.316 kb on - strand, within EX28DRAFT_1352 at 1367.316 kb on - strand, within EX28DRAFT_1352 at 1367.487 kb on + strand, within EX28DRAFT_1352 at 1367.487 kb on + strand, within EX28DRAFT_1352 at 1367.488 kb on - strand, within EX28DRAFT_1352 at 1367.745 kb on + strand at 1367.759 kb on - strand at 1367.769 kb on - strand at 1367.784 kb on + strand at 1367.845 kb on - strand at 1367.891 kb on - strand at 1368.129 kb on + strand, within EX28DRAFT_1353 at 1368.163 kb on + strand, within EX28DRAFT_1353 at 1368.202 kb on + strand, within EX28DRAFT_1353 at 1368.203 kb on - strand, within EX28DRAFT_1353 at 1368.310 kb on + strand, within EX28DRAFT_1353 at 1368.311 kb on - strand, within EX28DRAFT_1353 at 1368.311 kb on - strand, within EX28DRAFT_1353 at 1368.388 kb on - strand, within EX28DRAFT_1353 at 1368.449 kb on - strand, within EX28DRAFT_1353 at 1368.501 kb on - strand, within EX28DRAFT_1353
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,365,627 - EX28DRAFT_1351 0.53 -0.6 1,365,760 + EX28DRAFT_1351 0.70 +1.6 1,365,761 - EX28DRAFT_1351 0.70 -0.2 1,365,945 - -0.5 1,366,149 + +0.6 1,366,149 + +1.2 1,366,152 + +0.3 1,366,153 - +0.3 1,366,173 + -0.6 1,366,195 - -0.4 1,366,195 - -0.3 1,366,195 - +0.1 1,366,224 - -0.0 1,366,224 - +0.0 1,366,358 + +0.1 1,366,358 + +0.7 1,366,359 - +0.2 1,366,359 - -0.8 1,366,359 - +0.1 1,366,359 - +0.6 1,366,417 - +1.3 1,366,519 + -0.2 1,366,568 + EX28DRAFT_1352 0.14 -0.5 1,366,568 + EX28DRAFT_1352 0.14 +0.0 1,366,569 - EX28DRAFT_1352 0.14 +0.7 1,366,628 - EX28DRAFT_1352 0.18 -0.1 1,366,648 + EX28DRAFT_1352 0.20 -0.2 1,366,718 + EX28DRAFT_1352 0.25 -0.6 1,366,718 + EX28DRAFT_1352 0.25 +0.1 1,366,718 + EX28DRAFT_1352 0.25 +0.0 1,366,719 - EX28DRAFT_1352 0.25 +0.2 1,366,765 + EX28DRAFT_1352 0.29 +0.1 1,366,826 + EX28DRAFT_1352 0.33 -1.0 1,367,116 - EX28DRAFT_1352 0.55 -0.8 1,367,159 + EX28DRAFT_1352 0.58 -0.3 1,367,159 + EX28DRAFT_1352 0.58 -0.6 1,367,160 - EX28DRAFT_1352 0.58 -0.3 1,367,186 + EX28DRAFT_1352 0.60 -0.7 1,367,186 + EX28DRAFT_1352 0.60 -0.4 1,367,186 + EX28DRAFT_1352 0.60 -0.2 1,367,263 + EX28DRAFT_1352 0.66 +0.0 1,367,263 + EX28DRAFT_1352 0.66 +0.1 1,367,315 + EX28DRAFT_1352 0.70 +0.5 1,367,316 - EX28DRAFT_1352 0.70 -0.1 1,367,316 - EX28DRAFT_1352 0.70 +0.4 1,367,316 - EX28DRAFT_1352 0.70 -0.4 1,367,487 + EX28DRAFT_1352 0.83 +0.5 1,367,487 + EX28DRAFT_1352 0.83 -1.2 1,367,488 - EX28DRAFT_1352 0.83 -0.1 1,367,745 + +0.4 1,367,759 - -0.0 1,367,769 - -0.8 1,367,784 + -1.4 1,367,845 - +0.2 1,367,891 - -0.3 1,368,129 + EX28DRAFT_1353 0.16 +1.1 1,368,163 + EX28DRAFT_1353 0.18 -1.6 1,368,202 + EX28DRAFT_1353 0.20 +0.1 1,368,203 - EX28DRAFT_1353 0.20 +0.2 1,368,310 + EX28DRAFT_1353 0.27 -1.4 1,368,311 - EX28DRAFT_1353 0.27 +1.0 1,368,311 - EX28DRAFT_1353 0.27 +0.4 1,368,388 - EX28DRAFT_1353 0.32 -0.5 1,368,449 - EX28DRAFT_1353 0.35 -0.4 1,368,501 - EX28DRAFT_1353 0.38 -0.9
Or see this region's nucleotide sequence