Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1309 and EX28DRAFT_1310 are separated by 1 nucleotides EX28DRAFT_1310 and EX28DRAFT_1311 overlap by 4 nucleotides EX28DRAFT_1311 and EX28DRAFT_1312 are separated by 185 nucleotides EX28DRAFT_1312 and EX28DRAFT_1313 are separated by 3 nucleotides
EX28DRAFT_1309: EX28DRAFT_1309 - hypothetical protein, at 1,314,169 to 1,314,744
_1309
EX28DRAFT_1310: EX28DRAFT_1310 - phage replication protein P, at 1,314,746 to 1,315,435
_1310
EX28DRAFT_1311: EX28DRAFT_1311 - phage replication protein O, at 1,315,432 to 1,316,397
_1311
EX28DRAFT_1312: EX28DRAFT_1312 - Protein of unknown function (DUF1019), at 1,316,583 to 1,317,125
_1312
EX28DRAFT_1313: EX28DRAFT_1313 - Cro, at 1,317,129 to 1,317,329
_1313
Position (kb)
1315
1316
1317 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1314.437 kb on - strand, within EX28DRAFT_1309 at 1314.667 kb on + strand, within EX28DRAFT_1309 at 1314.713 kb on + strand at 1314.713 kb on + strand at 1314.714 kb on - strand at 1314.734 kb on - strand at 1314.932 kb on + strand, within EX28DRAFT_1310 at 1314.978 kb on + strand, within EX28DRAFT_1310 at 1314.979 kb on - strand, within EX28DRAFT_1310 at 1315.604 kb on + strand, within EX28DRAFT_1311 at 1315.640 kb on - strand, within EX28DRAFT_1311 at 1315.666 kb on - strand, within EX28DRAFT_1311 at 1315.784 kb on + strand, within EX28DRAFT_1311 at 1315.870 kb on - strand, within EX28DRAFT_1311 at 1315.870 kb on - strand, within EX28DRAFT_1311 at 1315.878 kb on + strand, within EX28DRAFT_1311 at 1315.879 kb on - strand, within EX28DRAFT_1311 at 1315.890 kb on + strand, within EX28DRAFT_1311 at 1315.891 kb on - strand, within EX28DRAFT_1311 at 1315.915 kb on + strand, within EX28DRAFT_1311 at 1315.975 kb on - strand, within EX28DRAFT_1311 at 1316.010 kb on + strand, within EX28DRAFT_1311 at 1316.011 kb on - strand, within EX28DRAFT_1311 at 1316.064 kb on - strand, within EX28DRAFT_1311 at 1316.191 kb on + strand, within EX28DRAFT_1311 at 1316.191 kb on + strand, within EX28DRAFT_1311 at 1316.191 kb on + strand, within EX28DRAFT_1311 at 1316.439 kb on - strand at 1316.458 kb on + strand at 1316.486 kb on + strand at 1316.661 kb on + strand, within EX28DRAFT_1312 at 1316.663 kb on + strand, within EX28DRAFT_1312 at 1316.673 kb on + strand, within EX28DRAFT_1312 at 1317.056 kb on + strand, within EX28DRAFT_1312 at 1317.056 kb on + strand, within EX28DRAFT_1312 at 1317.109 kb on + strand at 1317.152 kb on + strand, within EX28DRAFT_1313 at 1317.307 kb on + strand, within EX28DRAFT_1313 at 1317.368 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,314,437 - EX28DRAFT_1309 0.47 -1.2 1,314,667 + EX28DRAFT_1309 0.86 -0.7 1,314,713 + -0.1 1,314,713 + +0.0 1,314,714 - +0.0 1,314,734 - -1.6 1,314,932 + EX28DRAFT_1310 0.27 -1.6 1,314,978 + EX28DRAFT_1310 0.34 -1.2 1,314,979 - EX28DRAFT_1310 0.34 -0.3 1,315,604 + EX28DRAFT_1311 0.18 +0.2 1,315,640 - EX28DRAFT_1311 0.22 -0.0 1,315,666 - EX28DRAFT_1311 0.24 -0.5 1,315,784 + EX28DRAFT_1311 0.36 +0.1 1,315,870 - EX28DRAFT_1311 0.45 +0.2 1,315,870 - EX28DRAFT_1311 0.45 -4.0 1,315,878 + EX28DRAFT_1311 0.46 +0.2 1,315,879 - EX28DRAFT_1311 0.46 -0.6 1,315,890 + EX28DRAFT_1311 0.47 +0.5 1,315,891 - EX28DRAFT_1311 0.48 +0.5 1,315,915 + EX28DRAFT_1311 0.50 -0.2 1,315,975 - EX28DRAFT_1311 0.56 -0.0 1,316,010 + EX28DRAFT_1311 0.60 -0.1 1,316,011 - EX28DRAFT_1311 0.60 -0.1 1,316,064 - EX28DRAFT_1311 0.65 -0.5 1,316,191 + EX28DRAFT_1311 0.79 +0.4 1,316,191 + EX28DRAFT_1311 0.79 -1.3 1,316,191 + EX28DRAFT_1311 0.79 +0.1 1,316,439 - -0.0 1,316,458 + -0.3 1,316,486 + +0.3 1,316,661 + EX28DRAFT_1312 0.14 -0.9 1,316,663 + EX28DRAFT_1312 0.15 +0.6 1,316,673 + EX28DRAFT_1312 0.17 -0.1 1,317,056 + EX28DRAFT_1312 0.87 +0.1 1,317,056 + EX28DRAFT_1312 0.87 +1.0 1,317,109 + +0.8 1,317,152 + EX28DRAFT_1313 0.11 -1.3 1,317,307 + EX28DRAFT_1313 0.89 -0.1 1,317,368 + +1.7
Or see this region's nucleotide sequence