Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1307 and EX28DRAFT_1308 overlap by 4 nucleotides EX28DRAFT_1308 and EX28DRAFT_1309 overlap by 4 nucleotides EX28DRAFT_1309 and EX28DRAFT_1310 are separated by 1 nucleotides EX28DRAFT_1310 and EX28DRAFT_1311 overlap by 4 nucleotides
EX28DRAFT_1307: EX28DRAFT_1307 - hypothetical protein, at 1,313,625 to 1,313,978
_1307
EX28DRAFT_1308: EX28DRAFT_1308 - hypothetical protein, at 1,313,975 to 1,314,172
_1308
EX28DRAFT_1309: EX28DRAFT_1309 - hypothetical protein, at 1,314,169 to 1,314,744
_1309
EX28DRAFT_1310: EX28DRAFT_1310 - phage replication protein P, at 1,314,746 to 1,315,435
_1310
EX28DRAFT_1311: EX28DRAFT_1311 - phage replication protein O, at 1,315,432 to 1,316,397
_1311
Position (kb)
1314
1315
1316 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1313.845 kb on - strand, within EX28DRAFT_1307 at 1313.883 kb on + strand, within EX28DRAFT_1307 at 1313.919 kb on + strand, within EX28DRAFT_1307 at 1313.952 kb on + strand at 1314.012 kb on - strand, within EX28DRAFT_1308 at 1314.113 kb on + strand, within EX28DRAFT_1308 at 1314.179 kb on - strand at 1314.179 kb on - strand at 1314.355 kb on + strand, within EX28DRAFT_1309 at 1314.437 kb on - strand, within EX28DRAFT_1309 at 1314.667 kb on + strand, within EX28DRAFT_1309 at 1314.713 kb on + strand at 1314.713 kb on + strand at 1314.714 kb on - strand at 1314.734 kb on - strand at 1314.932 kb on + strand, within EX28DRAFT_1310 at 1314.978 kb on + strand, within EX28DRAFT_1310 at 1314.979 kb on - strand, within EX28DRAFT_1310 at 1315.604 kb on + strand, within EX28DRAFT_1311 at 1315.640 kb on - strand, within EX28DRAFT_1311 at 1315.666 kb on - strand, within EX28DRAFT_1311 at 1315.784 kb on + strand, within EX28DRAFT_1311 at 1315.870 kb on - strand, within EX28DRAFT_1311 at 1315.870 kb on - strand, within EX28DRAFT_1311 at 1315.878 kb on + strand, within EX28DRAFT_1311 at 1315.879 kb on - strand, within EX28DRAFT_1311 at 1315.890 kb on + strand, within EX28DRAFT_1311 at 1315.891 kb on - strand, within EX28DRAFT_1311 at 1315.915 kb on + strand, within EX28DRAFT_1311 at 1315.975 kb on - strand, within EX28DRAFT_1311 at 1316.010 kb on + strand, within EX28DRAFT_1311 at 1316.011 kb on - strand, within EX28DRAFT_1311 at 1316.064 kb on - strand, within EX28DRAFT_1311 at 1316.191 kb on + strand, within EX28DRAFT_1311 at 1316.191 kb on + strand, within EX28DRAFT_1311 at 1316.191 kb on + strand, within EX28DRAFT_1311
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,313,845 - EX28DRAFT_1307 0.62 -0.4 1,313,883 + EX28DRAFT_1307 0.73 -0.3 1,313,919 + EX28DRAFT_1307 0.83 -1.6 1,313,952 + -0.8 1,314,012 - EX28DRAFT_1308 0.19 -0.3 1,314,113 + EX28DRAFT_1308 0.70 -0.3 1,314,179 - +0.4 1,314,179 - -1.1 1,314,355 + EX28DRAFT_1309 0.32 -0.6 1,314,437 - EX28DRAFT_1309 0.47 -1.2 1,314,667 + EX28DRAFT_1309 0.86 -0.7 1,314,713 + -0.1 1,314,713 + +0.0 1,314,714 - +0.0 1,314,734 - -1.6 1,314,932 + EX28DRAFT_1310 0.27 -1.6 1,314,978 + EX28DRAFT_1310 0.34 -1.2 1,314,979 - EX28DRAFT_1310 0.34 -0.3 1,315,604 + EX28DRAFT_1311 0.18 +0.2 1,315,640 - EX28DRAFT_1311 0.22 -0.0 1,315,666 - EX28DRAFT_1311 0.24 -0.5 1,315,784 + EX28DRAFT_1311 0.36 +0.1 1,315,870 - EX28DRAFT_1311 0.45 +0.2 1,315,870 - EX28DRAFT_1311 0.45 -4.0 1,315,878 + EX28DRAFT_1311 0.46 +0.2 1,315,879 - EX28DRAFT_1311 0.46 -0.6 1,315,890 + EX28DRAFT_1311 0.47 +0.5 1,315,891 - EX28DRAFT_1311 0.48 +0.5 1,315,915 + EX28DRAFT_1311 0.50 -0.2 1,315,975 - EX28DRAFT_1311 0.56 -0.0 1,316,010 + EX28DRAFT_1311 0.60 -0.1 1,316,011 - EX28DRAFT_1311 0.60 -0.1 1,316,064 - EX28DRAFT_1311 0.65 -0.5 1,316,191 + EX28DRAFT_1311 0.79 +0.4 1,316,191 + EX28DRAFT_1311 0.79 -1.3 1,316,191 + EX28DRAFT_1311 0.79 +0.1
Or see this region's nucleotide sequence