Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1305

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1302 and EX28DRAFT_1303 overlap by 8 nucleotidesEX28DRAFT_1303 and EX28DRAFT_1304 overlap by 8 nucleotidesEX28DRAFT_1304 and EX28DRAFT_1305 are separated by 260 nucleotidesEX28DRAFT_1305 and EX28DRAFT_1306 are separated by 88 nucleotidesEX28DRAFT_1306 and EX28DRAFT_1307 are separated by 271 nucleotides EX28DRAFT_1302: EX28DRAFT_1302 - Bacteriophage Lambda NinG protein, at 1,310,478 to 1,311,089 _1302 EX28DRAFT_1303: EX28DRAFT_1303 - hypothetical protein, at 1,311,082 to 1,311,252 _1303 EX28DRAFT_1304: EX28DRAFT_1304 - NinB protein, at 1,311,245 to 1,311,694 _1304 EX28DRAFT_1305: EX28DRAFT_1305 - hypothetical protein, at 1,311,955 to 1,312,755 _1305 EX28DRAFT_1306: EX28DRAFT_1306 - hypothetical protein, at 1,312,844 to 1,313,353 _1306 EX28DRAFT_1307: EX28DRAFT_1307 - hypothetical protein, at 1,313,625 to 1,313,978 _1307 Position (kb) 1311 1312 1313Strain fitness (log2 ratio) -2 -1 0 1at 1311.046 kb on + strandat 1311.069 kb on - strandat 1311.084 kb on - strandat 1311.144 kb on - strand, within EX28DRAFT_1303at 1311.186 kb on + strand, within EX28DRAFT_1303at 1311.246 kb on + strandat 1311.336 kb on + strand, within EX28DRAFT_1304at 1311.379 kb on + strand, within EX28DRAFT_1304at 1311.498 kb on + strand, within EX28DRAFT_1304at 1311.502 kb on + strand, within EX28DRAFT_1304at 1311.502 kb on + strand, within EX28DRAFT_1304at 1311.517 kb on + strand, within EX28DRAFT_1304at 1311.539 kb on - strand, within EX28DRAFT_1304at 1311.539 kb on - strand, within EX28DRAFT_1304at 1311.602 kb on + strand, within EX28DRAFT_1304at 1311.647 kb on - strand, within EX28DRAFT_1304at 1311.789 kb on - strandat 1311.846 kb on - strandat 1312.029 kb on - strandat 1312.071 kb on + strand, within EX28DRAFT_1305at 1312.115 kb on + strand, within EX28DRAFT_1305at 1312.143 kb on + strand, within EX28DRAFT_1305at 1312.365 kb on - strand, within EX28DRAFT_1305at 1312.381 kb on - strand, within EX28DRAFT_1305at 1312.433 kb on - strand, within EX28DRAFT_1305at 1312.590 kb on + strand, within EX28DRAFT_1305at 1312.680 kb on - strandat 1312.731 kb on + strandat 1312.823 kb on - strandat 1312.831 kb on - strandat 1312.831 kb on - strandat 1312.850 kb on - strandat 1312.889 kb on + strandat 1312.889 kb on + strandat 1312.890 kb on - strandat 1312.894 kb on + strandat 1312.907 kb on - strand, within EX28DRAFT_1306at 1312.935 kb on + strand, within EX28DRAFT_1306at 1312.948 kb on + strand, within EX28DRAFT_1306at 1312.948 kb on + strand, within EX28DRAFT_1306at 1312.953 kb on + strand, within EX28DRAFT_1306at 1312.953 kb on + strand, within EX28DRAFT_1306at 1312.953 kb on + strand, within EX28DRAFT_1306at 1312.953 kb on + strand, within EX28DRAFT_1306at 1312.954 kb on - strand, within EX28DRAFT_1306at 1312.963 kb on + strand, within EX28DRAFT_1306at 1312.963 kb on + strand, within EX28DRAFT_1306at 1312.963 kb on + strand, within EX28DRAFT_1306at 1312.964 kb on - strand, within EX28DRAFT_1306at 1313.089 kb on - strand, within EX28DRAFT_1306at 1313.345 kb on - strandat 1313.410 kb on - strandat 1313.410 kb on - strandat 1313.437 kb on - strandat 1313.437 kb on - strandat 1313.470 kb on - strandat 1313.470 kb on - strandat 1313.492 kb on - strandat 1313.626 kb on + strandat 1313.627 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,311,046 + -0.9
1,311,069 - +0.8
1,311,084 - -0.5
1,311,144 - EX28DRAFT_1303 0.36 -0.1
1,311,186 + EX28DRAFT_1303 0.61 +1.4
1,311,246 + +0.3
1,311,336 + EX28DRAFT_1304 0.20 -0.6
1,311,379 + EX28DRAFT_1304 0.30 +0.1
1,311,498 + EX28DRAFT_1304 0.56 -0.6
1,311,502 + EX28DRAFT_1304 0.57 -0.1
1,311,502 + EX28DRAFT_1304 0.57 +0.1
1,311,517 + EX28DRAFT_1304 0.60 -0.2
1,311,539 - EX28DRAFT_1304 0.65 +0.1
1,311,539 - EX28DRAFT_1304 0.65 +0.1
1,311,602 + EX28DRAFT_1304 0.79 +0.8
1,311,647 - EX28DRAFT_1304 0.89 -0.1
1,311,789 - +1.4
1,311,846 - -0.4
1,312,029 - +0.4
1,312,071 + EX28DRAFT_1305 0.14 -2.2
1,312,115 + EX28DRAFT_1305 0.20 -0.2
1,312,143 + EX28DRAFT_1305 0.23 -0.7
1,312,365 - EX28DRAFT_1305 0.51 -0.2
1,312,381 - EX28DRAFT_1305 0.53 -2.4
1,312,433 - EX28DRAFT_1305 0.60 -1.1
1,312,590 + EX28DRAFT_1305 0.79 +0.3
1,312,680 - +0.5
1,312,731 + -0.4
1,312,823 - +0.4
1,312,831 - -0.4
1,312,831 - -2.4
1,312,850 - +0.3
1,312,889 + +1.5
1,312,889 + +1.6
1,312,890 - -1.6
1,312,894 + +0.5
1,312,907 - EX28DRAFT_1306 0.12 +0.8
1,312,935 + EX28DRAFT_1306 0.18 +0.8
1,312,948 + EX28DRAFT_1306 0.20 -0.6
1,312,948 + EX28DRAFT_1306 0.20 -1.7
1,312,953 + EX28DRAFT_1306 0.21 +0.9
1,312,953 + EX28DRAFT_1306 0.21 -0.0
1,312,953 + EX28DRAFT_1306 0.21 +0.4
1,312,953 + EX28DRAFT_1306 0.21 +0.5
1,312,954 - EX28DRAFT_1306 0.22 -0.3
1,312,963 + EX28DRAFT_1306 0.23 +0.9
1,312,963 + EX28DRAFT_1306 0.23 +0.1
1,312,963 + EX28DRAFT_1306 0.23 -0.9
1,312,964 - EX28DRAFT_1306 0.24 +0.5
1,313,089 - EX28DRAFT_1306 0.48 +0.3
1,313,345 - +1.2
1,313,410 - +1.5
1,313,410 - -0.9
1,313,437 - +1.4
1,313,437 - -0.5
1,313,470 - -2.0
1,313,470 - -0.2
1,313,492 - +1.4
1,313,626 + +1.1
1,313,627 - -0.0

Or see this region's nucleotide sequence