Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1270 and EX28DRAFT_1271 overlap by 59 nucleotides EX28DRAFT_1271 and EX28DRAFT_1272 overlap by 8 nucleotides EX28DRAFT_1272 and EX28DRAFT_1273 overlap by 1 nucleotides EX28DRAFT_1273 and EX28DRAFT_1274 are separated by 1 nucleotides
EX28DRAFT_1270: EX28DRAFT_1270 - Putative phage tail protein, at 1,287,299 to 1,289,782
_1270
EX28DRAFT_1271: EX28DRAFT_1271 - NlpC/P60 family, at 1,289,724 to 1,290,161
_1271
EX28DRAFT_1272: EX28DRAFT_1272 - hypothetical protein, at 1,290,154 to 1,290,624
_1272
EX28DRAFT_1273: EX28DRAFT_1273 - hypothetical protein, at 1,290,624 to 1,291,118
_1273
EX28DRAFT_1274: EX28DRAFT_1274 - hypothetical protein, at 1,291,120 to 1,294,545
_1274
Position (kb)
1290
1291
1292 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1289.671 kb on + strand at 1289.726 kb on - strand at 1289.788 kb on + strand, within EX28DRAFT_1271 at 1289.808 kb on + strand, within EX28DRAFT_1271 at 1289.895 kb on + strand, within EX28DRAFT_1271 at 1289.895 kb on + strand, within EX28DRAFT_1271 at 1289.896 kb on - strand, within EX28DRAFT_1271 at 1289.987 kb on - strand, within EX28DRAFT_1271 at 1290.114 kb on - strand, within EX28DRAFT_1271 at 1290.143 kb on + strand at 1290.155 kb on + strand at 1290.191 kb on + strand at 1290.191 kb on + strand at 1290.279 kb on - strand, within EX28DRAFT_1272 at 1290.333 kb on - strand, within EX28DRAFT_1272 at 1290.333 kb on - strand, within EX28DRAFT_1272 at 1290.346 kb on - strand, within EX28DRAFT_1272 at 1290.540 kb on - strand, within EX28DRAFT_1272 at 1290.557 kb on + strand, within EX28DRAFT_1272 at 1290.558 kb on - strand, within EX28DRAFT_1272 at 1290.558 kb on - strand, within EX28DRAFT_1272 at 1290.831 kb on + strand, within EX28DRAFT_1273 at 1290.910 kb on + strand, within EX28DRAFT_1273 at 1291.266 kb on - strand at 1291.365 kb on - strand at 1291.365 kb on - strand at 1291.365 kb on - strand at 1291.365 kb on - strand at 1291.421 kb on + strand at 1291.421 kb on + strand at 1291.585 kb on - strand, within EX28DRAFT_1274 at 1291.645 kb on - strand, within EX28DRAFT_1274 at 1291.645 kb on - strand, within EX28DRAFT_1274 at 1291.821 kb on + strand, within EX28DRAFT_1274 at 1291.821 kb on + strand, within EX28DRAFT_1274 at 1291.920 kb on - strand, within EX28DRAFT_1274 at 1291.986 kb on - strand, within EX28DRAFT_1274
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,289,671 + -0.0 1,289,726 - +0.1 1,289,788 + EX28DRAFT_1271 0.15 -0.3 1,289,808 + EX28DRAFT_1271 0.19 -1.1 1,289,895 + EX28DRAFT_1271 0.39 -1.8 1,289,895 + EX28DRAFT_1271 0.39 +1.4 1,289,896 - EX28DRAFT_1271 0.39 -0.4 1,289,987 - EX28DRAFT_1271 0.60 +1.9 1,290,114 - EX28DRAFT_1271 0.89 -0.1 1,290,143 + -1.1 1,290,155 + -0.1 1,290,191 + -1.4 1,290,191 + -0.3 1,290,279 - EX28DRAFT_1272 0.27 +0.3 1,290,333 - EX28DRAFT_1272 0.38 +0.5 1,290,333 - EX28DRAFT_1272 0.38 +0.4 1,290,346 - EX28DRAFT_1272 0.41 +0.8 1,290,540 - EX28DRAFT_1272 0.82 +0.7 1,290,557 + EX28DRAFT_1272 0.86 -0.8 1,290,558 - EX28DRAFT_1272 0.86 -0.8 1,290,558 - EX28DRAFT_1272 0.86 +1.1 1,290,831 + EX28DRAFT_1273 0.42 +1.9 1,290,910 + EX28DRAFT_1273 0.58 -0.1 1,291,266 - +0.7 1,291,365 - -0.1 1,291,365 - -1.0 1,291,365 - -0.3 1,291,365 - +0.1 1,291,421 + -0.3 1,291,421 + -0.5 1,291,585 - EX28DRAFT_1274 0.14 -0.3 1,291,645 - EX28DRAFT_1274 0.15 +0.4 1,291,645 - EX28DRAFT_1274 0.15 +0.2 1,291,821 + EX28DRAFT_1274 0.20 +0.3 1,291,821 + EX28DRAFT_1274 0.20 +1.3 1,291,920 - EX28DRAFT_1274 0.23 +0.7 1,291,986 - EX28DRAFT_1274 0.25 +0.5
Or see this region's nucleotide sequence