Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1261 and EX28DRAFT_1262 are separated by 2 nucleotides EX28DRAFT_1262 and EX28DRAFT_1263 are separated by 179 nucleotides EX28DRAFT_1263 and EX28DRAFT_1264 are separated by 179 nucleotides
EX28DRAFT_1261: EX28DRAFT_1261 - Nucleotidyltransferase/DNA polymerase involved in DNA repair, at 1,278,676 to 1,279,944
_1261
EX28DRAFT_1262: EX28DRAFT_1262 - Peptidase S24-like, at 1,279,947 to 1,280,366
_1262
EX28DRAFT_1263: EX28DRAFT_1263 - hypothetical protein, at 1,280,546 to 1,280,809
_1263
EX28DRAFT_1264: EX28DRAFT_1264 - Predicted acyltransferases, at 1,280,989 to 1,282,077
_1264
Position (kb)
1279
1280
1281 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1278.979 kb on - strand, within EX28DRAFT_1261 at 1278.979 kb on - strand, within EX28DRAFT_1261 at 1279.146 kb on + strand, within EX28DRAFT_1261 at 1279.147 kb on - strand, within EX28DRAFT_1261 at 1279.147 kb on - strand, within EX28DRAFT_1261 at 1279.283 kb on - strand, within EX28DRAFT_1261 at 1279.397 kb on + strand, within EX28DRAFT_1261 at 1279.397 kb on + strand, within EX28DRAFT_1261 at 1279.398 kb on - strand, within EX28DRAFT_1261 at 1279.398 kb on - strand, within EX28DRAFT_1261 at 1279.398 kb on - strand, within EX28DRAFT_1261 at 1279.398 kb on - strand, within EX28DRAFT_1261 at 1279.440 kb on + strand, within EX28DRAFT_1261 at 1279.441 kb on - strand, within EX28DRAFT_1261 at 1279.546 kb on - strand, within EX28DRAFT_1261 at 1279.596 kb on + strand, within EX28DRAFT_1261 at 1279.647 kb on + strand, within EX28DRAFT_1261 at 1279.648 kb on - strand, within EX28DRAFT_1261 at 1279.652 kb on + strand, within EX28DRAFT_1261 at 1279.652 kb on + strand, within EX28DRAFT_1261 at 1279.687 kb on - strand, within EX28DRAFT_1261 at 1279.914 kb on - strand at 1280.027 kb on - strand, within EX28DRAFT_1262 at 1280.114 kb on + strand, within EX28DRAFT_1262 at 1280.115 kb on - strand, within EX28DRAFT_1262 at 1280.142 kb on - strand, within EX28DRAFT_1262 at 1280.206 kb on - strand, within EX28DRAFT_1262 at 1280.213 kb on - strand, within EX28DRAFT_1262 at 1280.213 kb on - strand, within EX28DRAFT_1262 at 1280.216 kb on + strand, within EX28DRAFT_1262 at 1280.217 kb on - strand, within EX28DRAFT_1262 at 1280.217 kb on - strand, within EX28DRAFT_1262 at 1280.255 kb on + strand, within EX28DRAFT_1262 at 1280.270 kb on - strand, within EX28DRAFT_1262 at 1280.373 kb on + strand at 1280.373 kb on + strand at 1280.415 kb on + strand at 1280.471 kb on + strand at 1280.500 kb on - strand at 1280.548 kb on - strand at 1280.548 kb on - strand at 1280.548 kb on - strand at 1280.587 kb on + strand, within EX28DRAFT_1263 at 1280.593 kb on + strand, within EX28DRAFT_1263 at 1280.594 kb on - strand, within EX28DRAFT_1263 at 1280.594 kb on - strand, within EX28DRAFT_1263 at 1280.594 kb on - strand, within EX28DRAFT_1263 at 1280.598 kb on - strand, within EX28DRAFT_1263 at 1280.598 kb on - strand, within EX28DRAFT_1263 at 1280.710 kb on + strand, within EX28DRAFT_1263 at 1280.710 kb on + strand, within EX28DRAFT_1263 at 1280.710 kb on + strand, within EX28DRAFT_1263 at 1280.710 kb on + strand, within EX28DRAFT_1263 at 1280.711 kb on - strand, within EX28DRAFT_1263 at 1280.711 kb on - strand, within EX28DRAFT_1263 at 1280.711 kb on - strand, within EX28DRAFT_1263 at 1280.711 kb on - strand, within EX28DRAFT_1263 at 1280.711 kb on - strand, within EX28DRAFT_1263 at 1280.711 kb on - strand, within EX28DRAFT_1263 at 1280.711 kb on - strand, within EX28DRAFT_1263 at 1280.711 kb on - strand, within EX28DRAFT_1263 at 1280.760 kb on + strand, within EX28DRAFT_1263 at 1280.766 kb on + strand, within EX28DRAFT_1263 at 1280.811 kb on - strand at 1280.835 kb on - strand at 1280.854 kb on + strand at 1280.855 kb on - strand at 1280.915 kb on - strand at 1280.948 kb on - strand at 1280.986 kb on - strand at 1281.018 kb on - strand at 1281.149 kb on - strand, within EX28DRAFT_1264 at 1281.149 kb on - strand, within EX28DRAFT_1264 at 1281.193 kb on - strand, within EX28DRAFT_1264 at 1281.266 kb on - strand, within EX28DRAFT_1264 at 1281.267 kb on + strand, within EX28DRAFT_1264 at 1281.269 kb on + strand, within EX28DRAFT_1264 at 1281.294 kb on - strand, within EX28DRAFT_1264 at 1281.358 kb on + strand, within EX28DRAFT_1264
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,278,979 - EX28DRAFT_1261 0.24 -1.2 1,278,979 - EX28DRAFT_1261 0.24 +1.6 1,279,146 + EX28DRAFT_1261 0.37 -0.0 1,279,147 - EX28DRAFT_1261 0.37 -0.3 1,279,147 - EX28DRAFT_1261 0.37 -0.1 1,279,283 - EX28DRAFT_1261 0.48 +0.0 1,279,397 + EX28DRAFT_1261 0.57 +1.0 1,279,397 + EX28DRAFT_1261 0.57 -1.4 1,279,398 - EX28DRAFT_1261 0.57 +0.7 1,279,398 - EX28DRAFT_1261 0.57 -0.0 1,279,398 - EX28DRAFT_1261 0.57 -0.1 1,279,398 - EX28DRAFT_1261 0.57 +0.5 1,279,440 + EX28DRAFT_1261 0.60 -0.2 1,279,441 - EX28DRAFT_1261 0.60 -0.3 1,279,546 - EX28DRAFT_1261 0.69 +0.4 1,279,596 + EX28DRAFT_1261 0.72 -0.3 1,279,647 + EX28DRAFT_1261 0.77 +1.1 1,279,648 - EX28DRAFT_1261 0.77 -0.2 1,279,652 + EX28DRAFT_1261 0.77 -0.1 1,279,652 + EX28DRAFT_1261 0.77 +0.8 1,279,687 - EX28DRAFT_1261 0.80 +0.3 1,279,914 - +0.5 1,280,027 - EX28DRAFT_1262 0.19 -0.3 1,280,114 + EX28DRAFT_1262 0.40 -0.7 1,280,115 - EX28DRAFT_1262 0.40 +1.0 1,280,142 - EX28DRAFT_1262 0.46 -0.4 1,280,206 - EX28DRAFT_1262 0.62 -0.8 1,280,213 - EX28DRAFT_1262 0.63 -0.3 1,280,213 - EX28DRAFT_1262 0.63 +0.6 1,280,216 + EX28DRAFT_1262 0.64 -1.0 1,280,217 - EX28DRAFT_1262 0.64 +0.1 1,280,217 - EX28DRAFT_1262 0.64 +0.3 1,280,255 + EX28DRAFT_1262 0.73 +0.4 1,280,270 - EX28DRAFT_1262 0.77 -0.3 1,280,373 + +0.0 1,280,373 + -1.0 1,280,415 + +0.5 1,280,471 + -0.8 1,280,500 - -0.2 1,280,548 - -0.4 1,280,548 - -0.2 1,280,548 - -0.0 1,280,587 + EX28DRAFT_1263 0.16 +1.8 1,280,593 + EX28DRAFT_1263 0.18 -1.0 1,280,594 - EX28DRAFT_1263 0.18 +1.2 1,280,594 - EX28DRAFT_1263 0.18 -0.3 1,280,594 - EX28DRAFT_1263 0.18 -1.8 1,280,598 - EX28DRAFT_1263 0.20 -0.5 1,280,598 - EX28DRAFT_1263 0.20 +0.1 1,280,710 + EX28DRAFT_1263 0.62 -1.9 1,280,710 + EX28DRAFT_1263 0.62 +0.3 1,280,710 + EX28DRAFT_1263 0.62 -0.9 1,280,710 + EX28DRAFT_1263 0.62 +0.3 1,280,711 - EX28DRAFT_1263 0.62 -0.8 1,280,711 - EX28DRAFT_1263 0.62 +0.0 1,280,711 - EX28DRAFT_1263 0.62 -0.1 1,280,711 - EX28DRAFT_1263 0.62 -0.3 1,280,711 - EX28DRAFT_1263 0.62 -0.2 1,280,711 - EX28DRAFT_1263 0.62 +0.2 1,280,711 - EX28DRAFT_1263 0.62 -0.0 1,280,711 - EX28DRAFT_1263 0.62 +0.3 1,280,760 + EX28DRAFT_1263 0.81 -0.5 1,280,766 + EX28DRAFT_1263 0.83 +0.2 1,280,811 - +0.2 1,280,835 - +0.1 1,280,854 + -0.9 1,280,855 - -1.2 1,280,915 - +0.0 1,280,948 - -0.1 1,280,986 - +0.4 1,281,018 - -0.9 1,281,149 - EX28DRAFT_1264 0.15 -0.2 1,281,149 - EX28DRAFT_1264 0.15 -1.4 1,281,193 - EX28DRAFT_1264 0.19 +0.2 1,281,266 - EX28DRAFT_1264 0.25 -0.8 1,281,267 + EX28DRAFT_1264 0.26 -0.4 1,281,269 + EX28DRAFT_1264 0.26 +0.2 1,281,294 - EX28DRAFT_1264 0.28 +0.0 1,281,358 + EX28DRAFT_1264 0.34 +0.1
Or see this region's nucleotide sequence