Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1127 and EX28DRAFT_1128 are separated by 165 nucleotides EX28DRAFT_1128 and EX28DRAFT_1129 are separated by 155 nucleotides EX28DRAFT_1129 and EX28DRAFT_1130 are separated by 5 nucleotides EX28DRAFT_1130 and EX28DRAFT_1131 are separated by 87 nucleotides EX28DRAFT_1131 and EX28DRAFT_1132 are separated by 47 nucleotides
EX28DRAFT_1127: EX28DRAFT_1127 - hypothetical protein, at 1,143,015 to 1,143,806
_1127
EX28DRAFT_1128: EX28DRAFT_1128 - hypothetical protein, at 1,143,972 to 1,144,211
_1128
EX28DRAFT_1129: EX28DRAFT_1129 - hypothetical protein, at 1,144,367 to 1,144,786
_1129
EX28DRAFT_1130: EX28DRAFT_1130 - RNA polymerase sigma factor, sigma-70 family, at 1,144,792 to 1,145,352
_1130
EX28DRAFT_1131: EX28DRAFT_1131 - hypothetical protein, at 1,145,440 to 1,145,811
_1131
EX28DRAFT_1132: EX28DRAFT_1132 - Thiol:disulfide interchange protein, at 1,145,859 to 1,147,883
_1132
Position (kb) 1144
1145
1146 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1143.932 kb on + strand at 1144.054 kb on + strand, within EX28DRAFT_1128 at 1144.112 kb on - strand, within EX28DRAFT_1128 at 1144.299 kb on + strand at 1144.299 kb on + strand at 1144.299 kb on + strand at 1144.320 kb on + strand at 1144.351 kb on - strand at 1144.360 kb on - strand at 1144.437 kb on + strand, within EX28DRAFT_1129 at 1144.673 kb on - strand, within EX28DRAFT_1129 at 1144.925 kb on - strand, within EX28DRAFT_1130 at 1145.055 kb on - strand, within EX28DRAFT_1130 at 1145.129 kb on - strand, within EX28DRAFT_1130 at 1145.232 kb on + strand, within EX28DRAFT_1130 at 1145.348 kb on + strand at 1145.721 kb on + strand, within EX28DRAFT_1131 at 1145.721 kb on + strand, within EX28DRAFT_1131 at 1145.780 kb on + strand at 1145.780 kb on + strand at 1145.781 kb on - strand at 1146.025 kb on + strand at 1146.026 kb on - strand at 1146.045 kb on + strand at 1146.045 kb on + strand at 1146.144 kb on - strand, within EX28DRAFT_1132 at 1146.333 kb on - strand, within EX28DRAFT_1132
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,143,932 + +0.7 1,144,054 + EX28DRAFT_1128 0.34 -0.0 1,144,112 - EX28DRAFT_1128 0.58 -1.6 1,144,299 + -0.1 1,144,299 + +0.1 1,144,299 + -0.9 1,144,320 + -0.9 1,144,351 - -0.2 1,144,360 - -0.3 1,144,437 + EX28DRAFT_1129 0.17 -0.0 1,144,673 - EX28DRAFT_1129 0.73 +1.0 1,144,925 - EX28DRAFT_1130 0.24 -0.6 1,145,055 - EX28DRAFT_1130 0.47 -1.8 1,145,129 - EX28DRAFT_1130 0.60 -3.4 1,145,232 + EX28DRAFT_1130 0.78 -0.9 1,145,348 + +0.0 1,145,721 + EX28DRAFT_1131 0.76 +0.3 1,145,721 + EX28DRAFT_1131 0.76 +0.4 1,145,780 + -0.5 1,145,780 + -0.1 1,145,781 - -0.5 1,146,025 + +1.1 1,146,026 - +0.1 1,146,045 + +0.1 1,146,045 + -0.9 1,146,144 - EX28DRAFT_1132 0.14 +0.1 1,146,333 - EX28DRAFT_1132 0.23 -0.1
Or see this region's nucleotide sequence