Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1067

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1066 and EX28DRAFT_1067 are separated by 35 nucleotidesEX28DRAFT_1067 and EX28DRAFT_1068 are separated by 108 nucleotides EX28DRAFT_1066: EX28DRAFT_1066 - translation elongation factor EF-G, at 1,076,956 to 1,079,055 _1066 EX28DRAFT_1067: EX28DRAFT_1067 - Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, at 1,079,091 to 1,079,663 _1067 EX28DRAFT_1068: EX28DRAFT_1068 - Arylamine N-acetyltransferase, at 1,079,772 to 1,080,617 _1068 Position (kb) 1079 1080Strain fitness (log2 ratio) -2 -1 0 1 2at 1078.293 kb on + strand, within EX28DRAFT_1066at 1078.320 kb on + strand, within EX28DRAFT_1066at 1078.435 kb on - strand, within EX28DRAFT_1066at 1078.586 kb on - strand, within EX28DRAFT_1066at 1078.797 kb on - strand, within EX28DRAFT_1066at 1078.833 kb on + strand, within EX28DRAFT_1066at 1078.937 kb on - strandat 1078.978 kb on + strandat 1078.979 kb on - strandat 1078.979 kb on - strandat 1078.981 kb on - strandat 1078.981 kb on - strandat 1079.034 kb on + strandat 1079.053 kb on + strandat 1079.056 kb on + strandat 1079.157 kb on - strand, within EX28DRAFT_1067at 1079.407 kb on + strand, within EX28DRAFT_1067at 1079.407 kb on + strand, within EX28DRAFT_1067at 1079.637 kb on + strandat 1079.638 kb on - strandat 1079.638 kb on - strandat 1079.663 kb on + strandat 1079.678 kb on + strandat 1079.690 kb on + strandat 1079.707 kb on + strandat 1079.736 kb on + strandat 1079.739 kb on - strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.771 kb on + strandat 1079.772 kb on - strandat 1079.772 kb on - strandat 1079.772 kb on - strandat 1079.772 kb on - strandat 1079.860 kb on + strand, within EX28DRAFT_1068at 1079.860 kb on + strand, within EX28DRAFT_1068at 1079.860 kb on + strand, within EX28DRAFT_1068at 1079.861 kb on - strand, within EX28DRAFT_1068at 1079.861 kb on - strand, within EX28DRAFT_1068at 1079.891 kb on + strand, within EX28DRAFT_1068at 1079.891 kb on + strand, within EX28DRAFT_1068at 1079.892 kb on - strand, within EX28DRAFT_1068at 1079.974 kb on - strand, within EX28DRAFT_1068at 1080.216 kb on + strand, within EX28DRAFT_1068at 1080.309 kb on + strand, within EX28DRAFT_1068at 1080.309 kb on + strand, within EX28DRAFT_1068at 1080.461 kb on - strand, within EX28DRAFT_1068at 1080.461 kb on - strand, within EX28DRAFT_1068at 1080.461 kb on - strand, within EX28DRAFT_1068at 1080.461 kb on - strand, within EX28DRAFT_1068at 1080.496 kb on + strand, within EX28DRAFT_1068at 1080.497 kb on - strand, within EX28DRAFT_1068at 1080.499 kb on - strand, within EX28DRAFT_1068at 1080.499 kb on - strand, within EX28DRAFT_1068at 1080.499 kb on - strand, within EX28DRAFT_1068at 1080.505 kb on + strand, within EX28DRAFT_1068at 1080.651 kb on + strandat 1080.652 kb on - strandat 1080.652 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,078,293 + EX28DRAFT_1066 0.64 +0.2
1,078,320 + EX28DRAFT_1066 0.65 +0.1
1,078,435 - EX28DRAFT_1066 0.70 +0.3
1,078,586 - EX28DRAFT_1066 0.78 -1.1
1,078,797 - EX28DRAFT_1066 0.88 +1.0
1,078,833 + EX28DRAFT_1066 0.89 -0.4
1,078,937 - +0.3
1,078,978 + +0.4
1,078,979 - +0.3
1,078,979 - +0.2
1,078,981 - +2.2
1,078,981 - -2.3
1,079,034 + +0.6
1,079,053 + -1.5
1,079,056 + -0.2
1,079,157 - EX28DRAFT_1067 0.12 -1.8
1,079,407 + EX28DRAFT_1067 0.55 +0.0
1,079,407 + EX28DRAFT_1067 0.55 -0.8
1,079,637 + -0.7
1,079,638 - +0.6
1,079,638 - +0.8
1,079,663 + -2.0
1,079,678 + -0.1
1,079,690 + +0.5
1,079,707 + +0.9
1,079,736 + +0.1
1,079,739 - +0.1
1,079,771 + +0.1
1,079,771 + +1.1
1,079,771 + -0.5
1,079,771 + -1.4
1,079,771 + -1.0
1,079,771 + -0.1
1,079,771 + -0.1
1,079,771 + +0.5
1,079,772 - +0.1
1,079,772 - +0.3
1,079,772 - -0.2
1,079,772 - +0.1
1,079,860 + EX28DRAFT_1068 0.10 -1.6
1,079,860 + EX28DRAFT_1068 0.10 -0.0
1,079,860 + EX28DRAFT_1068 0.10 -0.1
1,079,861 - EX28DRAFT_1068 0.11 -0.1
1,079,861 - EX28DRAFT_1068 0.11 +0.5
1,079,891 + EX28DRAFT_1068 0.14 -0.4
1,079,891 + EX28DRAFT_1068 0.14 +0.8
1,079,892 - EX28DRAFT_1068 0.14 -0.8
1,079,974 - EX28DRAFT_1068 0.24 +0.3
1,080,216 + EX28DRAFT_1068 0.52 -1.2
1,080,309 + EX28DRAFT_1068 0.63 +0.0
1,080,309 + EX28DRAFT_1068 0.63 -0.4
1,080,461 - EX28DRAFT_1068 0.81 +0.8
1,080,461 - EX28DRAFT_1068 0.81 +0.4
1,080,461 - EX28DRAFT_1068 0.81 -0.6
1,080,461 - EX28DRAFT_1068 0.81 +0.5
1,080,496 + EX28DRAFT_1068 0.86 +2.5
1,080,497 - EX28DRAFT_1068 0.86 -1.2
1,080,499 - EX28DRAFT_1068 0.86 -0.9
1,080,499 - EX28DRAFT_1068 0.86 -0.4
1,080,499 - EX28DRAFT_1068 0.86 +0.2
1,080,505 + EX28DRAFT_1068 0.87 -0.3
1,080,651 + -0.7
1,080,652 - +0.3
1,080,652 - -1.1

Or see this region's nucleotide sequence