Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1018 and EX28DRAFT_1019 are separated by 271 nucleotides EX28DRAFT_1019 and EX28DRAFT_1020 are separated by 0 nucleotides EX28DRAFT_1020 and EX28DRAFT_1021 are separated by 128 nucleotides EX28DRAFT_1021 and EX28DRAFT_1022 overlap by 1 nucleotides
EX28DRAFT_1018: EX28DRAFT_1018 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric, at 1,023,692 to 1,027,216
_1018
EX28DRAFT_1019: EX28DRAFT_1019 - Putative hemolysin, at 1,027,488 to 1,027,754
_1019
EX28DRAFT_1020: EX28DRAFT_1020 - Heat shock protein, at 1,027,755 to 1,028,192
_1020
EX28DRAFT_1021: EX28DRAFT_1021 - Protein of unknown function (DUF2474), at 1,028,321 to 1,028,449
_1021
EX28DRAFT_1022: EX28DRAFT_1022 - cytochrome d oxidase, subunit II (cydB), at 1,028,449 to 1,029,459
_1022
Position (kb)
1027
1028 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1026.523 kb on - strand, within EX28DRAFT_1018 at 1026.556 kb on - strand, within EX28DRAFT_1018 at 1026.661 kb on + strand, within EX28DRAFT_1018 at 1026.661 kb on + strand, within EX28DRAFT_1018 at 1026.661 kb on + strand, within EX28DRAFT_1018 at 1026.662 kb on - strand, within EX28DRAFT_1018 at 1026.662 kb on - strand, within EX28DRAFT_1018 at 1026.768 kb on - strand, within EX28DRAFT_1018 at 1026.863 kb on - strand, within EX28DRAFT_1018 at 1026.936 kb on + strand at 1026.936 kb on + strand at 1027.127 kb on - strand at 1027.156 kb on + strand at 1027.208 kb on - strand at 1027.257 kb on - strand at 1027.278 kb on + strand at 1027.287 kb on + strand at 1027.287 kb on + strand at 1027.288 kb on - strand at 1027.289 kb on + strand at 1027.290 kb on - strand at 1027.356 kb on + strand at 1027.406 kb on + strand at 1027.406 kb on + strand at 1027.449 kb on - strand at 1027.449 kb on - strand at 1027.451 kb on + strand at 1027.451 kb on + strand at 1027.452 kb on - strand at 1027.457 kb on + strand at 1027.457 kb on + strand at 1027.458 kb on - strand at 1027.458 kb on - strand at 1027.458 kb on - strand at 1027.539 kb on - strand, within EX28DRAFT_1019 at 1027.712 kb on + strand, within EX28DRAFT_1019 at 1027.749 kb on + strand at 1027.757 kb on - strand at 1027.769 kb on + strand at 1027.804 kb on - strand, within EX28DRAFT_1020 at 1027.920 kb on - strand, within EX28DRAFT_1020 at 1027.925 kb on + strand, within EX28DRAFT_1020 at 1027.925 kb on + strand, within EX28DRAFT_1020 at 1027.926 kb on - strand, within EX28DRAFT_1020 at 1027.995 kb on - strand, within EX28DRAFT_1020 at 1027.995 kb on - strand, within EX28DRAFT_1020 at 1028.009 kb on + strand, within EX28DRAFT_1020 at 1028.102 kb on + strand, within EX28DRAFT_1020 at 1028.102 kb on + strand, within EX28DRAFT_1020 at 1028.138 kb on + strand, within EX28DRAFT_1020 at 1028.139 kb on - strand, within EX28DRAFT_1020 at 1028.208 kb on - strand at 1028.210 kb on - strand at 1028.210 kb on - strand at 1028.213 kb on + strand at 1028.266 kb on + strand at 1028.368 kb on + strand, within EX28DRAFT_1021 at 1028.369 kb on - strand, within EX28DRAFT_1021 at 1028.424 kb on - strand, within EX28DRAFT_1021 at 1028.492 kb on + strand at 1028.493 kb on - strand at 1028.493 kb on - strand at 1028.495 kb on + strand at 1028.496 kb on - strand at 1028.510 kb on + strand at 1028.510 kb on + strand at 1028.511 kb on - strand at 1028.553 kb on + strand, within EX28DRAFT_1022 at 1028.553 kb on + strand, within EX28DRAFT_1022 at 1028.611 kb on - strand, within EX28DRAFT_1022 at 1028.614 kb on - strand, within EX28DRAFT_1022 at 1028.614 kb on - strand, within EX28DRAFT_1022 at 1028.657 kb on - strand, within EX28DRAFT_1022 at 1028.723 kb on + strand, within EX28DRAFT_1022
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,026,523 - EX28DRAFT_1018 0.80 -1.0 1,026,556 - EX28DRAFT_1018 0.81 +0.1 1,026,661 + EX28DRAFT_1018 0.84 +0.0 1,026,661 + EX28DRAFT_1018 0.84 -0.4 1,026,661 + EX28DRAFT_1018 0.84 -1.4 1,026,662 - EX28DRAFT_1018 0.84 +0.1 1,026,662 - EX28DRAFT_1018 0.84 -0.2 1,026,768 - EX28DRAFT_1018 0.87 +0.0 1,026,863 - EX28DRAFT_1018 0.90 -1.0 1,026,936 + -1.2 1,026,936 + -0.8 1,027,127 - -0.4 1,027,156 + +0.2 1,027,208 - +0.9 1,027,257 - +1.0 1,027,278 + +3.1 1,027,287 + +0.3 1,027,287 + +0.2 1,027,288 - -0.1 1,027,289 + +0.1 1,027,290 - +0.8 1,027,356 + -0.1 1,027,406 + -0.4 1,027,406 + +0.3 1,027,449 - -0.8 1,027,449 - +0.3 1,027,451 + -0.1 1,027,451 + +1.0 1,027,452 - +0.3 1,027,457 + -0.2 1,027,457 + +0.1 1,027,458 - +0.6 1,027,458 - +0.6 1,027,458 - -0.9 1,027,539 - EX28DRAFT_1019 0.19 +0.4 1,027,712 + EX28DRAFT_1019 0.84 +3.8 1,027,749 + +1.7 1,027,757 - +0.7 1,027,769 + -0.2 1,027,804 - EX28DRAFT_1020 0.11 -0.5 1,027,920 - EX28DRAFT_1020 0.38 -0.5 1,027,925 + EX28DRAFT_1020 0.39 -2.0 1,027,925 + EX28DRAFT_1020 0.39 +0.4 1,027,926 - EX28DRAFT_1020 0.39 +0.2 1,027,995 - EX28DRAFT_1020 0.55 -0.3 1,027,995 - EX28DRAFT_1020 0.55 +0.1 1,028,009 + EX28DRAFT_1020 0.58 -2.4 1,028,102 + EX28DRAFT_1020 0.79 +0.0 1,028,102 + EX28DRAFT_1020 0.79 -0.6 1,028,138 + EX28DRAFT_1020 0.87 +0.3 1,028,139 - EX28DRAFT_1020 0.88 -0.5 1,028,208 - -0.4 1,028,210 - -0.1 1,028,210 - +0.2 1,028,213 + +0.3 1,028,266 + -0.6 1,028,368 + EX28DRAFT_1021 0.36 +0.0 1,028,369 - EX28DRAFT_1021 0.37 +0.3 1,028,424 - EX28DRAFT_1021 0.80 -0.9 1,028,492 + -0.2 1,028,493 - -0.1 1,028,493 - -0.1 1,028,495 + +0.7 1,028,496 - +1.5 1,028,510 + +1.5 1,028,510 + +0.1 1,028,511 - -0.1 1,028,553 + EX28DRAFT_1022 0.10 +0.6 1,028,553 + EX28DRAFT_1022 0.10 +0.1 1,028,611 - EX28DRAFT_1022 0.16 -0.0 1,028,614 - EX28DRAFT_1022 0.16 -0.2 1,028,614 - EX28DRAFT_1022 0.16 +0.1 1,028,657 - EX28DRAFT_1022 0.21 +0.4 1,028,723 + EX28DRAFT_1022 0.27 -2.4
Or see this region's nucleotide sequence