Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0999 and EX28DRAFT_1000 are separated by 90 nucleotides EX28DRAFT_1000 and EX28DRAFT_1001 are separated by 432 nucleotides
EX28DRAFT_0999: EX28DRAFT_0999 - ABC-type oligopeptide transport system, periplasmic component, at 1,002,336 to 1,003,952
_0999
EX28DRAFT_1000: EX28DRAFT_1000 - intracellular protease, PfpI family, at 1,004,043 to 1,004,606
_1000
EX28DRAFT_1001: EX28DRAFT_1001 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 1,005,039 to 1,006,271
_1001
Position (kb)
1004
1005 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1003.100 kb on + strand, within EX28DRAFT_0999 at 1003.122 kb on - strand, within EX28DRAFT_0999 at 1003.155 kb on + strand, within EX28DRAFT_0999 at 1003.191 kb on + strand, within EX28DRAFT_0999 at 1003.193 kb on + strand, within EX28DRAFT_0999 at 1003.215 kb on + strand, within EX28DRAFT_0999 at 1003.215 kb on + strand, within EX28DRAFT_0999 at 1003.215 kb on + strand, within EX28DRAFT_0999 at 1003.215 kb on + strand, within EX28DRAFT_0999 at 1003.216 kb on - strand, within EX28DRAFT_0999 at 1003.216 kb on - strand, within EX28DRAFT_0999 at 1003.216 kb on - strand, within EX28DRAFT_0999 at 1003.218 kb on + strand, within EX28DRAFT_0999 at 1003.219 kb on - strand, within EX28DRAFT_0999 at 1003.219 kb on - strand, within EX28DRAFT_0999 at 1003.221 kb on + strand, within EX28DRAFT_0999 at 1003.221 kb on + strand, within EX28DRAFT_0999 at 1003.222 kb on - strand, within EX28DRAFT_0999 at 1003.222 kb on - strand, within EX28DRAFT_0999 at 1003.318 kb on + strand, within EX28DRAFT_0999 at 1003.318 kb on + strand, within EX28DRAFT_0999 at 1003.318 kb on + strand, within EX28DRAFT_0999 at 1003.319 kb on - strand, within EX28DRAFT_0999 at 1003.319 kb on - strand, within EX28DRAFT_0999 at 1003.319 kb on - strand, within EX28DRAFT_0999 at 1003.319 kb on - strand, within EX28DRAFT_0999 at 1003.322 kb on + strand, within EX28DRAFT_0999 at 1003.322 kb on + strand, within EX28DRAFT_0999 at 1003.492 kb on - strand, within EX28DRAFT_0999 at 1003.538 kb on + strand, within EX28DRAFT_0999 at 1003.539 kb on - strand, within EX28DRAFT_0999 at 1003.656 kb on + strand, within EX28DRAFT_0999 at 1003.657 kb on - strand, within EX28DRAFT_0999 at 1003.707 kb on - strand, within EX28DRAFT_0999 at 1003.709 kb on + strand, within EX28DRAFT_0999 at 1003.710 kb on - strand, within EX28DRAFT_0999 at 1003.845 kb on + strand at 1003.851 kb on + strand at 1003.851 kb on + strand at 1003.852 kb on - strand at 1003.935 kb on + strand at 1003.935 kb on + strand at 1003.935 kb on + strand at 1003.936 kb on - strand at 1003.936 kb on - strand at 1003.959 kb on - strand at 1003.995 kb on - strand at 1004.061 kb on - strand at 1004.474 kb on + strand, within EX28DRAFT_1000 at 1004.476 kb on + strand, within EX28DRAFT_1000 at 1004.477 kb on - strand, within EX28DRAFT_1000 at 1004.477 kb on - strand, within EX28DRAFT_1000 at 1004.572 kb on + strand at 1004.637 kb on - strand at 1004.641 kb on + strand at 1004.641 kb on + strand at 1004.641 kb on + strand at 1004.642 kb on - strand at 1004.642 kb on - strand at 1004.700 kb on + strand at 1004.700 kb on + strand at 1004.713 kb on - strand at 1004.781 kb on + strand at 1004.791 kb on - strand at 1004.936 kb on - strand at 1004.948 kb on - strand at 1004.974 kb on + strand at 1004.974 kb on + strand at 1005.011 kb on + strand at 1005.185 kb on + strand, within EX28DRAFT_1001 at 1005.186 kb on - strand, within EX28DRAFT_1001 at 1005.309 kb on - strand, within EX28DRAFT_1001 at 1005.375 kb on + strand, within EX28DRAFT_1001 at 1005.378 kb on - strand, within EX28DRAFT_1001 at 1005.378 kb on - strand, within EX28DRAFT_1001 at 1005.441 kb on - strand, within EX28DRAFT_1001 at 1005.511 kb on - strand, within EX28DRAFT_1001 at 1005.592 kb on + strand, within EX28DRAFT_1001 at 1005.593 kb on - strand, within EX28DRAFT_1001
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,003,100 + EX28DRAFT_0999 0.47 +1.7 1,003,122 - EX28DRAFT_0999 0.49 +0.4 1,003,155 + EX28DRAFT_0999 0.51 -0.1 1,003,191 + EX28DRAFT_0999 0.53 -1.0 1,003,193 + EX28DRAFT_0999 0.53 -2.4 1,003,215 + EX28DRAFT_0999 0.54 -1.4 1,003,215 + EX28DRAFT_0999 0.54 -0.5 1,003,215 + EX28DRAFT_0999 0.54 +0.7 1,003,215 + EX28DRAFT_0999 0.54 -0.3 1,003,216 - EX28DRAFT_0999 0.54 +0.6 1,003,216 - EX28DRAFT_0999 0.54 +0.6 1,003,216 - EX28DRAFT_0999 0.54 +0.3 1,003,218 + EX28DRAFT_0999 0.55 +1.4 1,003,219 - EX28DRAFT_0999 0.55 -0.6 1,003,219 - EX28DRAFT_0999 0.55 -2.2 1,003,221 + EX28DRAFT_0999 0.55 -1.0 1,003,221 + EX28DRAFT_0999 0.55 -0.3 1,003,222 - EX28DRAFT_0999 0.55 -1.0 1,003,222 - EX28DRAFT_0999 0.55 -0.4 1,003,318 + EX28DRAFT_0999 0.61 -0.7 1,003,318 + EX28DRAFT_0999 0.61 +0.5 1,003,318 + EX28DRAFT_0999 0.61 -0.1 1,003,319 - EX28DRAFT_0999 0.61 +0.4 1,003,319 - EX28DRAFT_0999 0.61 -0.3 1,003,319 - EX28DRAFT_0999 0.61 +0.0 1,003,319 - EX28DRAFT_0999 0.61 -1.3 1,003,322 + EX28DRAFT_0999 0.61 +0.3 1,003,322 + EX28DRAFT_0999 0.61 +0.5 1,003,492 - EX28DRAFT_0999 0.71 -0.6 1,003,538 + EX28DRAFT_0999 0.74 -0.1 1,003,539 - EX28DRAFT_0999 0.74 -0.5 1,003,656 + EX28DRAFT_0999 0.82 +1.3 1,003,657 - EX28DRAFT_0999 0.82 -1.5 1,003,707 - EX28DRAFT_0999 0.85 +0.0 1,003,709 + EX28DRAFT_0999 0.85 -0.7 1,003,710 - EX28DRAFT_0999 0.85 +0.0 1,003,845 + -0.5 1,003,851 + +0.1 1,003,851 + -2.1 1,003,852 - +0.8 1,003,935 + -1.2 1,003,935 + -0.3 1,003,935 + +0.5 1,003,936 - +0.2 1,003,936 - -0.9 1,003,959 - -0.2 1,003,995 - +0.2 1,004,061 - +0.4 1,004,474 + EX28DRAFT_1000 0.76 +0.2 1,004,476 + EX28DRAFT_1000 0.77 -1.0 1,004,477 - EX28DRAFT_1000 0.77 -1.0 1,004,477 - EX28DRAFT_1000 0.77 -0.4 1,004,572 + +0.1 1,004,637 - -0.2 1,004,641 + -0.6 1,004,641 + -0.3 1,004,641 + +1.0 1,004,642 - -0.0 1,004,642 - -0.2 1,004,700 + +1.2 1,004,700 + +1.8 1,004,713 - +0.1 1,004,781 + +1.4 1,004,791 - +0.5 1,004,936 - -0.3 1,004,948 - +0.5 1,004,974 + -0.4 1,004,974 + +0.5 1,005,011 + -0.1 1,005,185 + EX28DRAFT_1001 0.12 -1.5 1,005,186 - EX28DRAFT_1001 0.12 -0.5 1,005,309 - EX28DRAFT_1001 0.22 +0.2 1,005,375 + EX28DRAFT_1001 0.27 -1.1 1,005,378 - EX28DRAFT_1001 0.27 -0.4 1,005,378 - EX28DRAFT_1001 0.27 -0.5 1,005,441 - EX28DRAFT_1001 0.33 -0.5 1,005,511 - EX28DRAFT_1001 0.38 +0.1 1,005,592 + EX28DRAFT_1001 0.45 +1.7 1,005,593 - EX28DRAFT_1001 0.45 -0.2
Or see this region's nucleotide sequence