Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0972 and EX28DRAFT_0973 overlap by 14 nucleotides EX28DRAFT_0973 and EX28DRAFT_0974 overlap by 4 nucleotides EX28DRAFT_0974 and EX28DRAFT_0975 are separated by 88 nucleotides
EX28DRAFT_0972: EX28DRAFT_0972 - ABC-type antimicrobial peptide transport system, permease component, at 973,897 to 974,787
_0972
EX28DRAFT_0973: EX28DRAFT_0973 - ABC-type antimicrobial peptide transport system, permease component, at 974,774 to 975,739
_0973
EX28DRAFT_0974: EX28DRAFT_0974 - ABC-type oligopeptide transport system, periplasmic component, at 975,736 to 977,376
_0974
EX28DRAFT_0975: EX28DRAFT_0975 - psp operon transcriptional activator PspF, at 977,465 to 978,442
_0975
Position (kb) 975
976
977
978 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 974.771 kb on - strand at 974.781 kb on - strand at 974.798 kb on - strand at 974.845 kb on + strand at 975.993 kb on - strand, within EX28DRAFT_0974 at 976.485 kb on - strand, within EX28DRAFT_0974 at 976.492 kb on - strand, within EX28DRAFT_0974 at 976.637 kb on - strand, within EX28DRAFT_0974 at 976.966 kb on - strand, within EX28DRAFT_0974 at 977.508 kb on + strand at 977.546 kb on - strand at 977.548 kb on - strand at 977.548 kb on - strand at 977.548 kb on - strand at 977.609 kb on + strand, within EX28DRAFT_0975 at 978.066 kb on + strand, within EX28DRAFT_0975 at 978.262 kb on + strand, within EX28DRAFT_0975 at 978.263 kb on - strand, within EX28DRAFT_0975 at 978.291 kb on + strand, within EX28DRAFT_0975 at 978.292 kb on - strand, within EX28DRAFT_0975 at 978.292 kb on - strand, within EX28DRAFT_0975
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 974,771 - -2.2 974,781 - +0.6 974,798 - -0.3 974,845 + -0.2 975,993 - EX28DRAFT_0974 0.16 +0.0 976,485 - EX28DRAFT_0974 0.46 -2.3 976,492 - EX28DRAFT_0974 0.46 -0.8 976,637 - EX28DRAFT_0974 0.55 -0.1 976,966 - EX28DRAFT_0974 0.75 -2.8 977,508 + +0.4 977,546 - -0.1 977,548 - +0.2 977,548 - +0.3 977,548 - -2.8 977,609 + EX28DRAFT_0975 0.15 +0.1 978,066 + EX28DRAFT_0975 0.61 -0.6 978,262 + EX28DRAFT_0975 0.81 -0.7 978,263 - EX28DRAFT_0975 0.82 -0.6 978,291 + EX28DRAFT_0975 0.84 -1.7 978,292 - EX28DRAFT_0975 0.85 -0.5 978,292 - EX28DRAFT_0975 0.85 -0.5
Or see this region's nucleotide sequence