Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0931 and EX28DRAFT_0932 are separated by 133 nucleotides EX28DRAFT_0932 and EX28DRAFT_0933 overlap by 1 nucleotides EX28DRAFT_0933 and EX28DRAFT_0934 are separated by 10 nucleotides
EX28DRAFT_0931: EX28DRAFT_0931 - Response regulator, at 929,913 to 930,548
_0931
EX28DRAFT_0932: EX28DRAFT_0932 - tryptophan synthase, alpha chain (EC 4.2.1.20), at 930,682 to 931,491
_0932
EX28DRAFT_0933: EX28DRAFT_0933 - tryptophan synthase, beta subunit, at 931,491 to 932,684
_0933
EX28DRAFT_0934: EX28DRAFT_0934 - indole-3-glycerol phosphate synthase (EC 4.1.1.48), at 932,695 to 934,053
_0934
Position (kb) 931
932
933 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 930.505 kb on + strand at 930.546 kb on + strand at 930.546 kb on + strand at 930.556 kb on + strand at 930.598 kb on + strand at 930.598 kb on + strand at 930.603 kb on - strand at 930.603 kb on - strand at 930.684 kb on - strand at 930.968 kb on + strand, within EX28DRAFT_0932 at 930.969 kb on - strand, within EX28DRAFT_0932 at 930.972 kb on + strand, within EX28DRAFT_0932 at 930.973 kb on - strand, within EX28DRAFT_0932 at 930.975 kb on - strand, within EX28DRAFT_0932 at 931.149 kb on - strand, within EX28DRAFT_0932 at 931.149 kb on - strand, within EX28DRAFT_0932 at 931.161 kb on + strand, within EX28DRAFT_0932 at 931.471 kb on + strand at 931.472 kb on - strand at 931.472 kb on - strand at 931.535 kb on + strand at 931.536 kb on - strand at 931.714 kb on + strand, within EX28DRAFT_0933 at 931.715 kb on - strand, within EX28DRAFT_0933 at 931.792 kb on + strand, within EX28DRAFT_0933 at 931.792 kb on + strand, within EX28DRAFT_0933 at 931.793 kb on - strand, within EX28DRAFT_0933 at 931.849 kb on + strand, within EX28DRAFT_0933 at 932.127 kb on - strand, within EX28DRAFT_0933 at 932.127 kb on - strand, within EX28DRAFT_0933 at 932.127 kb on - strand, within EX28DRAFT_0933 at 932.128 kb on + strand, within EX28DRAFT_0933 at 932.128 kb on + strand, within EX28DRAFT_0933 at 932.128 kb on + strand, within EX28DRAFT_0933 at 932.129 kb on - strand, within EX28DRAFT_0933 at 932.129 kb on - strand, within EX28DRAFT_0933 at 932.129 kb on - strand, within EX28DRAFT_0933 at 932.129 kb on - strand, within EX28DRAFT_0933 at 932.129 kb on - strand, within EX28DRAFT_0933 at 932.129 kb on - strand, within EX28DRAFT_0933 at 932.143 kb on + strand, within EX28DRAFT_0933 at 932.143 kb on + strand, within EX28DRAFT_0933 at 932.144 kb on - strand, within EX28DRAFT_0933 at 932.287 kb on + strand, within EX28DRAFT_0933 at 932.287 kb on + strand, within EX28DRAFT_0933 at 932.287 kb on + strand, within EX28DRAFT_0933 at 932.288 kb on - strand, within EX28DRAFT_0933 at 932.427 kb on - strand, within EX28DRAFT_0933 at 932.464 kb on + strand, within EX28DRAFT_0933 at 932.638 kb on + strand at 932.639 kb on - strand at 932.639 kb on - strand at 932.639 kb on - strand at 932.673 kb on + strand at 932.673 kb on + strand at 932.674 kb on - strand at 932.697 kb on - strand at 932.700 kb on - strand at 932.749 kb on - strand at 932.764 kb on + strand at 932.812 kb on + strand at 932.813 kb on - strand at 932.830 kb on + strand at 932.927 kb on + strand, within EX28DRAFT_0934 at 932.927 kb on + strand, within EX28DRAFT_0934 at 932.928 kb on - strand, within EX28DRAFT_0934 at 932.931 kb on + strand, within EX28DRAFT_0934 at 932.931 kb on + strand, within EX28DRAFT_0934 at 932.932 kb on - strand, within EX28DRAFT_0934 at 932.964 kb on + strand, within EX28DRAFT_0934 at 932.965 kb on - strand, within EX28DRAFT_0934 at 933.032 kb on + strand, within EX28DRAFT_0934 at 933.033 kb on - strand, within EX28DRAFT_0934 at 933.108 kb on + strand, within EX28DRAFT_0934 at 933.108 kb on + strand, within EX28DRAFT_0934 at 933.108 kb on + strand, within EX28DRAFT_0934 at 933.134 kb on + strand, within EX28DRAFT_0934 at 933.134 kb on + strand, within EX28DRAFT_0934 at 933.134 kb on + strand, within EX28DRAFT_0934 at 933.135 kb on - strand, within EX28DRAFT_0934 at 933.135 kb on - strand, within EX28DRAFT_0934 at 933.163 kb on - strand, within EX28DRAFT_0934 at 933.163 kb on - strand, within EX28DRAFT_0934 at 933.377 kb on - strand, within EX28DRAFT_0934 at 933.377 kb on - strand, within EX28DRAFT_0934 at 933.669 kb on - strand, within EX28DRAFT_0934 at 933.669 kb on - strand, within EX28DRAFT_0934
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 930,505 + +1.0 930,546 + -0.4 930,546 + +0.5 930,556 + -2.2 930,598 + -0.9 930,598 + +0.0 930,603 - -0.2 930,603 - +0.2 930,684 - -2.6 930,968 + EX28DRAFT_0932 0.35 -1.0 930,969 - EX28DRAFT_0932 0.35 -1.2 930,972 + EX28DRAFT_0932 0.36 +1.8 930,973 - EX28DRAFT_0932 0.36 -0.2 930,975 - EX28DRAFT_0932 0.36 +1.1 931,149 - EX28DRAFT_0932 0.58 -3.6 931,149 - EX28DRAFT_0932 0.58 +2.3 931,161 + EX28DRAFT_0932 0.59 -2.0 931,471 + +2.3 931,472 - -3.8 931,472 - -0.5 931,535 + -1.1 931,536 - -0.7 931,714 + EX28DRAFT_0933 0.19 -0.6 931,715 - EX28DRAFT_0933 0.19 -1.3 931,792 + EX28DRAFT_0933 0.25 +0.1 931,792 + EX28DRAFT_0933 0.25 -1.6 931,793 - EX28DRAFT_0933 0.25 -3.0 931,849 + EX28DRAFT_0933 0.30 -1.7 932,127 - EX28DRAFT_0933 0.53 -1.0 932,127 - EX28DRAFT_0933 0.53 -1.7 932,127 - EX28DRAFT_0933 0.53 -1.0 932,128 + EX28DRAFT_0933 0.53 -1.4 932,128 + EX28DRAFT_0933 0.53 -1.2 932,128 + EX28DRAFT_0933 0.53 -4.1 932,129 - EX28DRAFT_0933 0.53 -1.0 932,129 - EX28DRAFT_0933 0.53 -0.6 932,129 - EX28DRAFT_0933 0.53 -1.9 932,129 - EX28DRAFT_0933 0.53 -0.8 932,129 - EX28DRAFT_0933 0.53 -0.9 932,129 - EX28DRAFT_0933 0.53 -0.9 932,143 + EX28DRAFT_0933 0.55 +1.0 932,143 + EX28DRAFT_0933 0.55 -1.5 932,144 - EX28DRAFT_0933 0.55 -0.9 932,287 + EX28DRAFT_0933 0.67 -1.2 932,287 + EX28DRAFT_0933 0.67 -2.0 932,287 + EX28DRAFT_0933 0.67 -0.2 932,288 - EX28DRAFT_0933 0.67 -1.7 932,427 - EX28DRAFT_0933 0.78 -1.4 932,464 + EX28DRAFT_0933 0.81 -1.7 932,638 + -1.3 932,639 - -0.8 932,639 - -0.1 932,639 - -0.8 932,673 + -0.8 932,673 + -0.4 932,674 - -0.7 932,697 - -0.4 932,700 - -0.6 932,749 - -2.4 932,764 + -4.3 932,812 + -0.5 932,813 - -1.9 932,830 + -0.7 932,927 + EX28DRAFT_0934 0.17 -0.6 932,927 + EX28DRAFT_0934 0.17 -0.2 932,928 - EX28DRAFT_0934 0.17 -2.7 932,931 + EX28DRAFT_0934 0.17 -3.2 932,931 + EX28DRAFT_0934 0.17 -1.1 932,932 - EX28DRAFT_0934 0.17 -0.8 932,964 + EX28DRAFT_0934 0.20 -3.1 932,965 - EX28DRAFT_0934 0.20 -0.3 933,032 + EX28DRAFT_0934 0.25 -1.9 933,033 - EX28DRAFT_0934 0.25 -2.2 933,108 + EX28DRAFT_0934 0.30 -2.8 933,108 + EX28DRAFT_0934 0.30 -0.9 933,108 + EX28DRAFT_0934 0.30 +0.4 933,134 + EX28DRAFT_0934 0.32 -0.6 933,134 + EX28DRAFT_0934 0.32 -2.8 933,134 + EX28DRAFT_0934 0.32 -3.9 933,135 - EX28DRAFT_0934 0.32 -3.2 933,135 - EX28DRAFT_0934 0.32 -1.5 933,163 - EX28DRAFT_0934 0.34 -2.3 933,163 - EX28DRAFT_0934 0.34 -2.0 933,377 - EX28DRAFT_0934 0.50 -1.9 933,377 - EX28DRAFT_0934 0.50 -1.8 933,669 - EX28DRAFT_0934 0.72 -2.8 933,669 - EX28DRAFT_0934 0.72 -3.6
Or see this region's nucleotide sequence