Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0920 and EX28DRAFT_0921 are separated by 41 nucleotides EX28DRAFT_0921 and EX28DRAFT_0922 are separated by 205 nucleotides EX28DRAFT_0922 and EX28DRAFT_0923 are separated by 38 nucleotides EX28DRAFT_0923 and EX28DRAFT_0924 are separated by 104 nucleotides
EX28DRAFT_0920: EX28DRAFT_0920 - Transcriptional regulators, at 921,883 to 922,836
_0920
EX28DRAFT_0921: EX28DRAFT_0921 - Uncharacterized protein conserved in bacteria, at 922,878 to 923,174
_0921
EX28DRAFT_0922: EX28DRAFT_0922 - TonB family C-terminal domain, at 923,380 to 924,117
_0922
EX28DRAFT_0923: EX28DRAFT_0923 - Acyl-CoA hydrolase, at 924,156 to 924,551
_0923
EX28DRAFT_0924: EX28DRAFT_0924 - intracellular septation protein A, at 924,656 to 925,195
_0924
Position (kb) 923
924
925 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 922.412 kb on - strand, within EX28DRAFT_0920 at 922.479 kb on + strand, within EX28DRAFT_0920 at 922.602 kb on + strand, within EX28DRAFT_0920 at 922.714 kb on - strand, within EX28DRAFT_0920 at 922.834 kb on + strand at 922.841 kb on + strand at 922.893 kb on - strand at 922.894 kb on + strand at 923.065 kb on - strand, within EX28DRAFT_0921 at 923.207 kb on + strand at 923.207 kb on + strand at 923.208 kb on - strand at 923.213 kb on - strand at 923.240 kb on - strand at 923.260 kb on - strand at 923.260 kb on - strand at 923.386 kb on - strand at 923.911 kb on - strand, within EX28DRAFT_0922 at 923.975 kb on + strand, within EX28DRAFT_0922 at 923.996 kb on + strand, within EX28DRAFT_0922 at 923.998 kb on - strand, within EX28DRAFT_0922 at 924.196 kb on - strand, within EX28DRAFT_0923 at 924.196 kb on - strand, within EX28DRAFT_0923 at 924.206 kb on - strand, within EX28DRAFT_0923 at 924.209 kb on + strand, within EX28DRAFT_0923 at 924.209 kb on + strand, within EX28DRAFT_0923 at 924.210 kb on - strand, within EX28DRAFT_0923 at 924.230 kb on + strand, within EX28DRAFT_0923 at 924.230 kb on + strand, within EX28DRAFT_0923 at 924.232 kb on + strand, within EX28DRAFT_0923 at 924.267 kb on - strand, within EX28DRAFT_0923 at 924.294 kb on - strand, within EX28DRAFT_0923 at 924.294 kb on - strand, within EX28DRAFT_0923 at 924.294 kb on - strand, within EX28DRAFT_0923 at 924.294 kb on - strand, within EX28DRAFT_0923 at 924.438 kb on - strand, within EX28DRAFT_0923 at 924.558 kb on - strand at 924.589 kb on + strand at 924.589 kb on + strand at 924.590 kb on - strand at 924.615 kb on - strand at 924.679 kb on + strand at 924.687 kb on + strand at 924.688 kb on - strand at 924.688 kb on - strand at 924.693 kb on + strand at 924.693 kb on + strand at 924.693 kb on + strand at 924.694 kb on - strand at 924.719 kb on - strand, within EX28DRAFT_0924
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 922,412 - EX28DRAFT_0920 0.55 -2.4 922,479 + EX28DRAFT_0920 0.62 +0.5 922,602 + EX28DRAFT_0920 0.75 +0.2 922,714 - EX28DRAFT_0920 0.87 -1.3 922,834 + -0.8 922,841 + +0.7 922,893 - -0.4 922,894 + -0.2 923,065 - EX28DRAFT_0921 0.63 +0.3 923,207 + +1.4 923,207 + +0.0 923,208 - +0.2 923,213 - +0.5 923,240 - -1.0 923,260 - -1.1 923,260 - -0.3 923,386 - +0.2 923,911 - EX28DRAFT_0922 0.72 -0.0 923,975 + EX28DRAFT_0922 0.81 -1.1 923,996 + EX28DRAFT_0922 0.83 -0.2 923,998 - EX28DRAFT_0922 0.84 -0.8 924,196 - EX28DRAFT_0923 0.10 +0.8 924,196 - EX28DRAFT_0923 0.10 +0.3 924,206 - EX28DRAFT_0923 0.13 +0.4 924,209 + EX28DRAFT_0923 0.13 +0.9 924,209 + EX28DRAFT_0923 0.13 +0.4 924,210 - EX28DRAFT_0923 0.14 -0.1 924,230 + EX28DRAFT_0923 0.19 -1.0 924,230 + EX28DRAFT_0923 0.19 -0.4 924,232 + EX28DRAFT_0923 0.19 -0.9 924,267 - EX28DRAFT_0923 0.28 -0.7 924,294 - EX28DRAFT_0923 0.35 +1.2 924,294 - EX28DRAFT_0923 0.35 -0.9 924,294 - EX28DRAFT_0923 0.35 +0.5 924,294 - EX28DRAFT_0923 0.35 -3.6 924,438 - EX28DRAFT_0923 0.71 -0.2 924,558 - -0.4 924,589 + +0.1 924,589 + -0.7 924,590 - +2.5 924,615 - +2.1 924,679 + -0.3 924,687 + -0.6 924,688 - -0.6 924,688 - +0.5 924,693 + -1.5 924,693 + -0.5 924,693 + -4.0 924,694 - -1.1 924,719 - EX28DRAFT_0924 0.12 -2.9
Or see this region's nucleotide sequence