Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0864

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0863 and EX28DRAFT_0864 are separated by 549 nucleotidesEX28DRAFT_0864 and EX28DRAFT_0865 are separated by 65 nucleotides EX28DRAFT_0863: EX28DRAFT_0863 - DNA-binding protein H-NS, at 874,579 to 874,992 _0863 EX28DRAFT_0864: EX28DRAFT_0864 - thymidine kinase (EC 2.7.1.21), at 875,542 to 876,156 _0864 EX28DRAFT_0865: EX28DRAFT_0865 - Alcohol dehydrogenase, class IV, at 876,222 to 878,900 _0865 Position (kb) 875 876 877Strain fitness (log2 ratio) -2 -1 0 1 2at 875.097 kb on + strandat 875.101 kb on + strandat 875.101 kb on + strandat 875.110 kb on + strandat 875.131 kb on - strandat 875.257 kb on - strandat 875.279 kb on - strandat 875.279 kb on - strandat 875.289 kb on + strandat 875.296 kb on + strandat 875.297 kb on - strandat 875.361 kb on - strandat 875.363 kb on - strandat 875.390 kb on - strandat 875.464 kb on + strandat 875.554 kb on + strandat 875.554 kb on + strandat 875.555 kb on - strandat 875.618 kb on - strand, within EX28DRAFT_0864at 875.647 kb on + strand, within EX28DRAFT_0864at 875.648 kb on - strand, within EX28DRAFT_0864at 875.650 kb on - strand, within EX28DRAFT_0864at 875.761 kb on - strand, within EX28DRAFT_0864at 876.056 kb on + strand, within EX28DRAFT_0864at 876.057 kb on - strand, within EX28DRAFT_0864at 876.057 kb on - strand, within EX28DRAFT_0864at 876.073 kb on + strand, within EX28DRAFT_0864at 876.097 kb on + strandat 876.098 kb on - strandat 876.100 kb on - strandat 876.171 kb on + strandat 876.171 kb on + strandat 876.220 kb on - strandat 876.220 kb on - strandat 876.314 kb on - strandat 876.377 kb on + strandat 876.378 kb on - strandat 876.410 kb on + strandat 876.410 kb on + strandat 876.410 kb on + strandat 876.411 kb on - strandat 876.411 kb on - strandat 876.411 kb on - strandat 876.414 kb on + strandat 876.415 kb on - strandat 876.415 kb on - strandat 876.604 kb on + strand, within EX28DRAFT_0865at 876.605 kb on - strand, within EX28DRAFT_0865at 876.648 kb on - strand, within EX28DRAFT_0865at 876.728 kb on + strand, within EX28DRAFT_0865at 876.779 kb on + strand, within EX28DRAFT_0865at 876.779 kb on + strand, within EX28DRAFT_0865at 876.916 kb on + strand, within EX28DRAFT_0865at 876.916 kb on + strand, within EX28DRAFT_0865at 876.917 kb on - strand, within EX28DRAFT_0865at 876.917 kb on - strand, within EX28DRAFT_0865at 877.071 kb on + strand, within EX28DRAFT_0865

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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875,097 + +0.3
875,101 + +0.7
875,101 + +1.1
875,110 + +0.2
875,131 - -1.2
875,257 - +0.2
875,279 - +1.0
875,279 - +0.5
875,289 + -0.5
875,296 + +0.1
875,297 - +1.1
875,361 - +0.7
875,363 - -2.4
875,390 - -0.5
875,464 + -1.0
875,554 + -0.7
875,554 + -0.4
875,555 - +0.2
875,618 - EX28DRAFT_0864 0.12 -0.6
875,647 + EX28DRAFT_0864 0.17 +0.2
875,648 - EX28DRAFT_0864 0.17 +0.4
875,650 - EX28DRAFT_0864 0.18 +1.4
875,761 - EX28DRAFT_0864 0.36 -0.6
876,056 + EX28DRAFT_0864 0.84 +0.6
876,057 - EX28DRAFT_0864 0.84 +0.8
876,057 - EX28DRAFT_0864 0.84 +2.0
876,073 + EX28DRAFT_0864 0.86 +0.3
876,097 + +0.9
876,098 - -0.2
876,100 - +1.1
876,171 + -0.6
876,171 + +0.4
876,220 - +0.1
876,220 - +0.1
876,314 - -0.0
876,377 + -1.1
876,378 - +0.8
876,410 + +0.4
876,410 + +0.8
876,410 + -0.9
876,411 - +1.0
876,411 - +0.6
876,411 - -0.2
876,414 + -0.8
876,415 - +2.0
876,415 - +0.1
876,604 + EX28DRAFT_0865 0.14 +0.8
876,605 - EX28DRAFT_0865 0.14 +0.2
876,648 - EX28DRAFT_0865 0.16 +0.4
876,728 + EX28DRAFT_0865 0.19 -0.3
876,779 + EX28DRAFT_0865 0.21 -0.7
876,779 + EX28DRAFT_0865 0.21 +0.4
876,916 + EX28DRAFT_0865 0.26 -0.1
876,916 + EX28DRAFT_0865 0.26 -0.1
876,917 - EX28DRAFT_0865 0.26 -0.8
876,917 - EX28DRAFT_0865 0.26 -0.0
877,071 + EX28DRAFT_0865 0.32 -1.1

Or see this region's nucleotide sequence