Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0712

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0710 and EX28DRAFT_0711 are separated by 24 nucleotidesEX28DRAFT_0711 and EX28DRAFT_0712 are separated by 110 nucleotidesEX28DRAFT_0712 and EX28DRAFT_0713 are separated by 136 nucleotidesEX28DRAFT_0713 and EX28DRAFT_0714 are separated by 1 nucleotides EX28DRAFT_0710: EX28DRAFT_0710 - DNA polymerase III, epsilon subunit and related 3'-5' exonucleases, at 710,280 to 710,942 _0710 EX28DRAFT_0711: EX28DRAFT_0711 - Predicted amidohydrolase, at 710,967 to 711,617 _0711 EX28DRAFT_0712: EX28DRAFT_0712 - DNA polymerase III, theta subunit, at 711,728 to 711,958 _0712 EX28DRAFT_0713: EX28DRAFT_0713 - Uncharacterized protein, homolog of Cu resistance protein CopC, at 712,095 to 712,466 _0713 EX28DRAFT_0714: EX28DRAFT_0714 - Putative copper export protein, at 712,468 to 713,337 _0714 Position (kb) 711 712Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 710.728 kb on + strand, within EX28DRAFT_0710at 710.728 kb on + strand, within EX28DRAFT_0710at 710.728 kb on + strand, within EX28DRAFT_0710at 710.729 kb on - strand, within EX28DRAFT_0710at 710.731 kb on + strand, within EX28DRAFT_0710at 710.732 kb on - strand, within EX28DRAFT_0710at 710.732 kb on - strand, within EX28DRAFT_0710at 710.895 kb on + strandat 710.974 kb on - strandat 711.121 kb on + strand, within EX28DRAFT_0711at 711.121 kb on + strand, within EX28DRAFT_0711at 711.122 kb on - strand, within EX28DRAFT_0711at 711.122 kb on - strand, within EX28DRAFT_0711at 711.122 kb on - strand, within EX28DRAFT_0711at 711.125 kb on + strand, within EX28DRAFT_0711at 711.126 kb on - strand, within EX28DRAFT_0711at 711.252 kb on - strand, within EX28DRAFT_0711at 711.252 kb on - strand, within EX28DRAFT_0711at 711.399 kb on + strand, within EX28DRAFT_0711at 711.453 kb on + strand, within EX28DRAFT_0711at 711.552 kb on - strand, within EX28DRAFT_0711at 711.552 kb on - strand, within EX28DRAFT_0711at 711.565 kb on - strandat 711.565 kb on - strandat 711.587 kb on - strandat 711.587 kb on - strandat 711.601 kb on - strandat 711.629 kb on + strandat 711.631 kb on + strandat 711.631 kb on + strandat 711.631 kb on + strandat 711.652 kb on - strandat 711.657 kb on + strandat 711.658 kb on - strandat 711.729 kb on + strandat 711.730 kb on - strandat 711.747 kb on + strandat 711.867 kb on + strand, within EX28DRAFT_0712at 711.868 kb on - strand, within EX28DRAFT_0712at 711.960 kb on - strandat 712.018 kb on - strandat 712.042 kb on + strandat 712.068 kb on - strandat 712.121 kb on - strandat 712.121 kb on - strandat 712.121 kb on - strandat 712.236 kb on - strand, within EX28DRAFT_0713at 712.236 kb on - strand, within EX28DRAFT_0713at 712.236 kb on - strand, within EX28DRAFT_0713at 712.430 kb on + strandat 712.431 kb on - strandat 712.447 kb on - strandat 712.464 kb on + strandat 712.464 kb on + strandat 712.465 kb on - strandat 712.483 kb on + strandat 712.501 kb on - strandat 712.911 kb on + strand, within EX28DRAFT_0714at 712.911 kb on + strand, within EX28DRAFT_0714at 712.912 kb on - strand, within EX28DRAFT_0714at 712.916 kb on - strand, within EX28DRAFT_0714

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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710,728 + EX28DRAFT_0710 0.68 -0.6
710,728 + EX28DRAFT_0710 0.68 -1.6
710,728 + EX28DRAFT_0710 0.68 +0.3
710,729 - EX28DRAFT_0710 0.68 -0.2
710,731 + EX28DRAFT_0710 0.68 -0.2
710,732 - EX28DRAFT_0710 0.68 -0.8
710,732 - EX28DRAFT_0710 0.68 -0.7
710,895 + +0.3
710,974 - +0.3
711,121 + EX28DRAFT_0711 0.24 +0.8
711,121 + EX28DRAFT_0711 0.24 +0.1
711,122 - EX28DRAFT_0711 0.24 +0.2
711,122 - EX28DRAFT_0711 0.24 -0.8
711,122 - EX28DRAFT_0711 0.24 -0.2
711,125 + EX28DRAFT_0711 0.24 -0.6
711,126 - EX28DRAFT_0711 0.24 +0.3
711,252 - EX28DRAFT_0711 0.44 -0.5
711,252 - EX28DRAFT_0711 0.44 -0.5
711,399 + EX28DRAFT_0711 0.66 -0.6
711,453 + EX28DRAFT_0711 0.75 -0.8
711,552 - EX28DRAFT_0711 0.90 +1.8
711,552 - EX28DRAFT_0711 0.90 +1.0
711,565 - -0.7
711,565 - -0.2
711,587 - -0.5
711,587 - -0.2
711,601 - +0.4
711,629 + +0.7
711,631 + +0.6
711,631 + +0.8
711,631 + -0.3
711,652 - -0.5
711,657 + -0.7
711,658 - -0.8
711,729 + +0.0
711,730 - -0.1
711,747 + -1.6
711,867 + EX28DRAFT_0712 0.60 +2.7
711,868 - EX28DRAFT_0712 0.61 -0.1
711,960 - -0.3
712,018 - -1.4
712,042 + +0.0
712,068 - +0.3
712,121 - +1.8
712,121 - +0.8
712,121 - -0.2
712,236 - EX28DRAFT_0713 0.38 +0.1
712,236 - EX28DRAFT_0713 0.38 -0.5
712,236 - EX28DRAFT_0713 0.38 +0.5
712,430 + +0.3
712,431 - -0.5
712,447 - -0.5
712,464 + -0.2
712,464 + -0.7
712,465 - +1.0
712,483 + -1.1
712,501 - -3.5
712,911 + EX28DRAFT_0714 0.51 +0.2
712,911 + EX28DRAFT_0714 0.51 +1.1
712,912 - EX28DRAFT_0714 0.51 +0.2
712,916 - EX28DRAFT_0714 0.51 -0.9

Or see this region's nucleotide sequence