Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0647 and EX28DRAFT_0648 are separated by 202 nucleotides EX28DRAFT_0648 and EX28DRAFT_0649 are separated by 425 nucleotides EX28DRAFT_0649 and EX28DRAFT_0650 are separated by 42 nucleotides
EX28DRAFT_0647: EX28DRAFT_0647 - Ferritin-like protein, at 640,975 to 641,472
_0647
EX28DRAFT_0648: EX28DRAFT_0648 - YecR-like lipoprotein, at 641,675 to 642,013
_0648
EX28DRAFT_0649: EX28DRAFT_0649 - Protein of unknown function (DUF2766), at 642,439 to 642,690
_0649
EX28DRAFT_0650: EX28DRAFT_0650 - anaerobic c4-dicarboxylate membrane transporter family protein, at 642,733 to 644,076
_0650
Position (kb) 642
643 Strain fitness (log2 ratio) -1
0
1 at 641.532 kb on - strand at 641.562 kb on + strand at 641.719 kb on + strand, within EX28DRAFT_0648 at 641.725 kb on + strand, within EX28DRAFT_0648 at 641.725 kb on + strand, within EX28DRAFT_0648 at 641.725 kb on + strand, within EX28DRAFT_0648 at 641.725 kb on + strand, within EX28DRAFT_0648 at 641.728 kb on - strand, within EX28DRAFT_0648 at 641.818 kb on - strand, within EX28DRAFT_0648 at 641.858 kb on + strand, within EX28DRAFT_0648 at 641.858 kb on + strand, within EX28DRAFT_0648 at 641.859 kb on - strand, within EX28DRAFT_0648 at 641.859 kb on - strand, within EX28DRAFT_0648 at 641.859 kb on - strand, within EX28DRAFT_0648 at 641.862 kb on + strand, within EX28DRAFT_0648 at 641.862 kb on + strand, within EX28DRAFT_0648 at 641.863 kb on - strand, within EX28DRAFT_0648 at 641.863 kb on - strand, within EX28DRAFT_0648 at 641.863 kb on - strand, within EX28DRAFT_0648 at 641.874 kb on + strand, within EX28DRAFT_0648 at 641.962 kb on + strand, within EX28DRAFT_0648 at 641.962 kb on + strand, within EX28DRAFT_0648 at 641.966 kb on - strand, within EX28DRAFT_0648 at 641.966 kb on - strand, within EX28DRAFT_0648 at 642.037 kb on + strand at 642.409 kb on + strand at 642.410 kb on - strand at 642.422 kb on - strand at 642.426 kb on - strand at 642.564 kb on + strand, within EX28DRAFT_0649 at 642.564 kb on + strand, within EX28DRAFT_0649 at 642.564 kb on + strand, within EX28DRAFT_0649 at 642.564 kb on + strand, within EX28DRAFT_0649 at 642.564 kb on + strand, within EX28DRAFT_0649 at 642.713 kb on + strand at 642.713 kb on + strand at 642.713 kb on + strand at 642.713 kb on + strand at 642.713 kb on + strand at 642.713 kb on + strand at 642.713 kb on + strand at 642.714 kb on - strand at 642.714 kb on - strand at 642.714 kb on - strand at 642.714 kb on - strand at 642.714 kb on - strand at 642.734 kb on + strand at 642.805 kb on - strand at 642.908 kb on + strand, within EX28DRAFT_0650 at 643.037 kb on + strand, within EX28DRAFT_0650 at 643.037 kb on + strand, within EX28DRAFT_0650 at 643.082 kb on - strand, within EX28DRAFT_0650 at 643.185 kb on + strand, within EX28DRAFT_0650 at 643.204 kb on - strand, within EX28DRAFT_0650 at 643.234 kb on + strand, within EX28DRAFT_0650 at 643.235 kb on - strand, within EX28DRAFT_0650 at 643.235 kb on - strand, within EX28DRAFT_0650 at 643.235 kb on - strand, within EX28DRAFT_0650 at 643.289 kb on - strand, within EX28DRAFT_0650 at 643.402 kb on + strand, within EX28DRAFT_0650 at 643.426 kb on - strand, within EX28DRAFT_0650 at 643.469 kb on - strand, within EX28DRAFT_0650
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 641,532 - -1.1 641,562 + -0.8 641,719 + EX28DRAFT_0648 0.13 -0.6 641,725 + EX28DRAFT_0648 0.15 +0.1 641,725 + EX28DRAFT_0648 0.15 +0.9 641,725 + EX28DRAFT_0648 0.15 -1.5 641,725 + EX28DRAFT_0648 0.15 +0.4 641,728 - EX28DRAFT_0648 0.16 +0.3 641,818 - EX28DRAFT_0648 0.42 -1.4 641,858 + EX28DRAFT_0648 0.54 -0.1 641,858 + EX28DRAFT_0648 0.54 -1.0 641,859 - EX28DRAFT_0648 0.54 +0.3 641,859 - EX28DRAFT_0648 0.54 -0.1 641,859 - EX28DRAFT_0648 0.54 -0.2 641,862 + EX28DRAFT_0648 0.55 +0.2 641,862 + EX28DRAFT_0648 0.55 +0.1 641,863 - EX28DRAFT_0648 0.55 +0.3 641,863 - EX28DRAFT_0648 0.55 -1.2 641,863 - EX28DRAFT_0648 0.55 -0.3 641,874 + EX28DRAFT_0648 0.59 -0.4 641,962 + EX28DRAFT_0648 0.85 +0.4 641,962 + EX28DRAFT_0648 0.85 +0.5 641,966 - EX28DRAFT_0648 0.86 -0.2 641,966 - EX28DRAFT_0648 0.86 -0.3 642,037 + -0.9 642,409 + +0.6 642,410 - -0.2 642,422 - +0.3 642,426 - +0.2 642,564 + EX28DRAFT_0649 0.50 -1.3 642,564 + EX28DRAFT_0649 0.50 -0.7 642,564 + EX28DRAFT_0649 0.50 -0.0 642,564 + EX28DRAFT_0649 0.50 -0.6 642,564 + EX28DRAFT_0649 0.50 +0.3 642,713 + +1.7 642,713 + -0.9 642,713 + +0.1 642,713 + -0.3 642,713 + +0.3 642,713 + -0.9 642,713 + +0.6 642,714 - -0.0 642,714 - -0.0 642,714 - +0.9 642,714 - -0.0 642,714 - +0.9 642,734 + -0.2 642,805 - -0.4 642,908 + EX28DRAFT_0650 0.13 -1.7 643,037 + EX28DRAFT_0650 0.23 +0.2 643,037 + EX28DRAFT_0650 0.23 +0.2 643,082 - EX28DRAFT_0650 0.26 -1.4 643,185 + EX28DRAFT_0650 0.34 +1.2 643,204 - EX28DRAFT_0650 0.35 -1.3 643,234 + EX28DRAFT_0650 0.37 +0.3 643,235 - EX28DRAFT_0650 0.37 +0.1 643,235 - EX28DRAFT_0650 0.37 +0.0 643,235 - EX28DRAFT_0650 0.37 -0.1 643,289 - EX28DRAFT_0650 0.41 -0.4 643,402 + EX28DRAFT_0650 0.50 +0.2 643,426 - EX28DRAFT_0650 0.52 -0.6 643,469 - EX28DRAFT_0650 0.55 +1.0
Or see this region's nucleotide sequence